RetrogeneDB ID: | retro_mdom_1168 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 3:340362637..340362886(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000009218 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.27 % |
Parental protein coverage: | 71.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | EMAVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALNNVNIGSLICNVGVGGPAP |
E...SE..CIYS.LI.H..E.TVTEDKI..LIK.A.VNVEPF..GLFAKAL..VNI.S.ICN.GVGGPA. | |
Retrocopy | EITISERICIYSDLIFHKNEITVTEDKIDVLIKEAVVNVEPF*LGLFAKALSSVNIESFICNIGVGGPAL |
Parental | AAGGAAPAGGAAP |
AAG.AA.A....P | |
Retrocopy | AAGSAALASTITP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 676 .80 RPM |
SRP007412_cerebellum | 0 .00 RPM | 470 .09 RPM |
SRP007412_heart | 0 .00 RPM | 1522 .45 RPM |
SRP007412_kidney | 0 .00 RPM | 1632 .87 RPM |
SRP007412_liver | 0 .00 RPM | 1362 .94 RPM |
SRP007412_testis | 0 .00 RPM | 214 .11 RPM |