RetrogeneDB ID: | retro_mdom_385 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 1:353652944..353653175(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000008219 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000009218 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.36 % |
Parental protein coverage: | 67.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EMAVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALNNVNIGSLICNVGVGGPAP |
EMAVS.L.CIYS.LILH.DEV.VT.DKINALIK.AGVNVEPFWPGLF.K..N.VNIGSLICN..VG..AP | |
Retrocopy | EMAVSQLTCIYSYLILHNDEVMVTQDKINALIKVAGVNVEPFWPGLFVKGPNDVNIGSLICNIVVGA-AP |
Parental | AAGGAAPA |
A.....PA | |
Retrocopy | ATRDDVPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 676 .80 RPM |
SRP007412_cerebellum | 0 .00 RPM | 470 .09 RPM |
SRP007412_heart | 0 .00 RPM | 1522 .45 RPM |
SRP007412_kidney | 0 .00 RPM | 1632 .87 RPM |
SRP007412_liver | 0 .00 RPM | 1362 .94 RPM |
SRP007412_testis | 0 .00 RPM | 214 .11 RPM |