RetrogeneDB ID: | retro_eeur_497 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_327347:12178..12429(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPE | ||
Ensembl ID: | ENSEEUG00000006187 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide E [Source:HGNC Symbol;Acc:11161] |
Percent Identity: | 62.35 % |
Parental protein coverage: | 91.11 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KVQKVMVQPINLIF-RYLQNRSRIQVWLYEQVNMRIEGCIIXXXXXXXXXXXDAEIHSKTKSRK-QLG-I |
KVQKVMVQ.INLIF.R.LQNRS.IQVW..EQVNM.IEGCII............A...S..K..K.QLG.. | |
Retrocopy | KVQKVMVQLINLIF>RHLQNRSWIQVWC*EQVNMQIEGCIIGSEEFVNLVLDGAGDSS*NKVKK>QLGQT |
Parental | MLKGDNITLLQSVSN |
MLK.DN.TLLQS.SN | |
Retrocopy | MLKRDNVTLLQSISN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .13 RPM |
SRP017611_kidney | 0 .00 RPM | 1 .88 RPM |
SRP017611_liver | 0 .00 RPM | 1 .13 RPM |