RetrogeneDB ID:

retro_meug_378

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold107415:4196..4391(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SNRPE
Ensembl ID:ENSMEUG00000015262
Aliases:None
Description:small nuclear ribonucleoprotein polypeptide E [Source:HGNC Symbol;Acc:11161]


Retrocopy-Parental alignment summary:






>retro_meug_378
CGGTCCCGAATTCAAGTGTGGCTATATGAACAAGTAAATATGCGAATAGAGGGCTGCATAATTGGTTTTGATGAGTATAT
GAATCGGGTATTGGATGATGCAGAGGAGATTCACTTTAAAACAAAGTCAAGGAAACAGCTTGGCCGGATCATGCTAAAGG
GAGACAATATTACTCTACTACAAAGTGTCTCTAAC

ORF - retro_meug_378 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.92 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVSN
RSRIQVWLYEQVNMRIEGCIIGFDEYMN.VLDDAEEIH.KTKSRKQLGRIMLKGDNITLLQSVSN
RetrocopyRSRIQVWLYEQVNMRIEGCIIGFDEYMNRVLDDAEEIHFKTKSRKQLGRIMLKGDNITLLQSVSN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_378 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_378 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 91 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000067351 retrocopy
Dasypus novemcinctus ENSDNOG0000000449024 retrocopies
Echinops telfairi ENSETEG0000001401524 retrocopies
Gorilla gorilla ENSGGOG000000007557 retrocopies
Macropus eugenii ENSMEUG00000015262 1 retrocopy
retro_meug_378 ,
Myotis lucifugus ENSMLUG000000132448 retrocopies
Mustela putorius furoENSMPUG000000116427 retrocopies
Pongo abelii ENSPPYG000000003268 retrocopies
Sorex araneus ENSSARG000000033119 retrocopies
Vicugna pacos ENSVPAG000000111622 retrocopies



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