RetrogeneDB ID: | retro_mmur_160 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_1525:21221..21736(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF3 | ||
Ensembl ID: | ENSMICG00000004674 | ||
Aliases: | None | ||
Description: | serine/arginine-rich splicing factor 3 [Source:HGNC Symbol;Acc:10785] |
Percent Identity: | 67.23 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 8 |
Parental | MHRD-SC-PLDCKVYVGN-LGNNGNKT-ELE-RAFGYY---GPLRSVW-VARNPPGF-AFVEFEDP-RDA |
MH.D.SC.PLDCKVYV...LGNNG.KT..LE.RAFG.....G.L.SVW.VARN...F.AF...ED..RDA | |
Retrocopy | MHHD>SC>PLDCKVYVSH>LGNNGSKT>KLE>RAFGLFYSWGGLQSVW>VARNSIDF>AFC*IEDSLRDA |
Parental | ADAVRELDGRTLCGCRVRVELSNGEKRSRNRG-PPP-SWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSR |
ADAVRELDGR.LCGC.VRVEL.NG..........PP.SWG.RPRDDY.RRSP.....S.R.RSFS.S.SR | |
Retrocopy | ADAVRELDGRILCGCCVRVELPNGXXXXKSKS>GPPPSWGGRPRDDYHRRSPLRCHGSSRKRSFSGS*SR |
Parental | SLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK |
SLSRDRRR.RSLSRERNHKPS.SF.RS.S.SR.NERK | |
Retrocopy | SLSRDRRRDRSLSRERNHKPSQSFCRSHSPSRPNERK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000040006 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000016062 | 5 retrocopies | |
Homo sapiens | ENSG00000112081 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000018193 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000004674 | 5 retrocopies | |
Microcebus murinus | ENSMICG00000008965 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010671 | 6 retrocopies | |
Mustela putorius furo | ENSMPUG00000014215 | 1 retrocopy | |
Mus musculus | ENSMUSG00000071172 | 9 retrocopies | |
Otolemur garnettii | ENSOGAG00000000502 | 6 retrocopies | |
Ochotona princeps | ENSOPRG00000006006 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000000520 | 11 retrocopies | |
Sus scrofa | ENSSSCG00000001564 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014280 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000013498 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000013447 | 11 retrocopies | |
Vicugna pacos | ENSVPAG00000005481 | 1 retrocopy |