RetrogeneDB ID: | retro_btau_1176 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 29:21407827..21408207(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF3 | ||
Ensembl ID: | ENSBTAG00000040006 | ||
Aliases: | SRSF3, SFRS3 | ||
Description: | Serine/arginine-rich splicing factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q3SZR8] |
Percent Identity: | 66.41 % |
Parental protein coverage: | 76.83 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | RSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDD-YR |
.SVWVARNPP.FA.VEFEDPRDAA..V..L.GRTLCGC.V..EL..GEK.S.N.GP.P.WG...RDD... | |
Retrocopy | QSVWVARNPPDFASVEFEDPRDAAGTV*NLNGRTLCGCQVKMELPEGEKISQNCGPLPFWGCSLRDD>NQ |
Parental | RRSPPPRRRSPR-RRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNE |
R.S.PP...SPR..RSFS.SR.RSLS.DR.RERSLS..RN.K...SFSRSRS.SRS.E | |
Retrocopy | RMSTPP*HKSPR>KRSFSCSRTRSLSKDRGRERSLSQKRNQKLRLSFSRSRSQSRSIE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 57 .68 RPM |
ERP005899_muscle | 0 .00 RPM | 60 .92 RPM |
SRP017611_brain | 0 .00 RPM | 18 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 49 .79 RPM |
SRP017611_liver | 0 .00 RPM | 21 .14 RPM |
SRP030211_testis | 0 .00 RPM | 77 .70 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012792 | 1 retrocopy | |
Bos taurus | ENSBTAG00000040006 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000016062 | 5 retrocopies | |
Homo sapiens | ENSG00000112081 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000018193 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000004674 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000010671 | 6 retrocopies | |
Mustela putorius furo | ENSMPUG00000014215 | 1 retrocopy | |
Mus musculus | ENSMUSG00000071172 | 9 retrocopies | |
Otolemur garnettii | ENSOGAG00000000502 | 6 retrocopies | |
Ochotona princeps | ENSOPRG00000006006 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000000520 | 11 retrocopies | |
Sus scrofa | ENSSSCG00000001564 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014280 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000013498 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000013447 | 11 retrocopies | |
Vicugna pacos | ENSVPAG00000005481 | 1 retrocopy |