Parental gene:

SRSF3, ENSOPRG00000006006

Aliases:None
Description:serine/arginine-rich splicing factor 3 [Source:HGNC Symbol;Acc:10785]
Organism:Southern American pika (Ochotona princeps)
Coordinates:GeneScaffold_1233:136516..140636(+)


>ENSOPRG00000006006
ATGCATCGTGATTCCTGTCCATTGGACTGTAAGGTTTACGTAGGTAATCTTGGAAACAATGGCAACAAGACTGAATTGGA
ACGGGCCTTTGGCTACTATGGACCACTCCGAAGTGTGTGGGTTGCAAGAAACCCTCCTGGCTTTGCTTTTGTTGAATTTG
AAGACCCCCGGGATGCAGCTGATGCTGTCCGCGAGCTAGATGGAAGAACGCTATGTGGCTGTCGTGTGAGAGTGGAGCTG
TCGAATGGCGAAAAAAGAAGTCGAAATCGTGGTCCGCCTCCCTCTTGGGGTCGTCGCCCTCGAGATGATTATCGTAGGAG
AAGTCCTCCACCTCGACGCAGATCTCCAAGAAGGAGAAGCTTTTCTCGCAGCCGCAGCAGGTCCCTTTCTAGAGACAGGA
GAAGAGAAAGATCACTGTCTCGGGAGAGAAATCACAAGCCGTCCCGCTCTTTCTCTAGGTCTCGGAGCCGTTCTAGGTCA
AATGAAAGAAAATAG

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000040006 ortholog_one2one 5 retrogenes
retro_btau_1176, retro_btau_1442, retro_btau_1445, retro_btau_1665, retro_btau_1813,
Callithrix jacchus ENSCJAG00000016062 ortholog_one2many 5 retrogenes
retro_cjac_1035, retro_cjac_1969, retro_cjac_2006, retro_cjac_620, retro_cjac_746,
Homo sapiens ENSG00000112081 ortholog_one2one 4 retrogenes
retro_hsap_2140, retro_hsap_2299, retro_hsap_2304, retro_hsap_757,
Loxodonta africana ENSLAFG00000018193 ortholog_one2one 2 retrogenes
retro_lafr_1219, retro_lafr_80,
Microcebus murinus ENSMICG00000004674 ortholog_one2one 5 retrogenes
retro_mmur_1090, retro_mmur_160, retro_mmur_287, retro_mmur_710, retro_mmur_916,
Myotis lucifugus ENSMLUG00000010671 ortholog_one2many 6 retrogenes
retro_mluc_1205, retro_mluc_1312, retro_mluc_1554, retro_mluc_2283, retro_mluc_278, retro_mluc_51,
Mustela putorius furo ENSMPUG00000014215 ortholog_one2one 1 retrogene
retro_mputfur_613,
Mus musculus ENSMUSG00000071172 ortholog_one2one 9 retrogenes
retro_mmus_100, retro_mmus_1347, retro_mmus_1749, retro_mmus_2294, retro_mmus_2337, retro_mmus_2433, retro_mmus_2654, retro_mmus_2933, retro_mmus_3629,
Otolemur garnettii ENSOGAG00000000502 possible_ortholog 6 retrogenes
retro_ogar_1850, retro_ogar_1959, retro_ogar_2131, retro_ogar_2783, retro_ogar_597, retro_ogar_803,
Ochotona princeps ENSOPRG00000001234 other_paralog 2 retrogenes
retro_opri_335, retro_opri_625,
Ochotona princeps ENSOPRG00000004234 other_paralog 1 retrogene
retro_opri_878,
Rattus norvegicus ENSRNOG00000000520 ortholog_one2one 11 retrogenes
retro_rnor_1010, retro_rnor_1283, retro_rnor_1321, retro_rnor_1339, retro_rnor_1647, retro_rnor_1697, retro_rnor_1889, retro_rnor_2424, retro_rnor_634, retro_rnor_728, retro_rnor_790,
Sus scrofa ENSSSCG00000001564 ortholog_one2one 1 retrogene
retro_sscr_1038,
Ictidomys tridecemlineatus ENSSTOG00000014280 ortholog_one2one 5 retrogenes
retro_itri_123, retro_itri_502, retro_itri_664, retro_itri_857, retro_itri_901,
Tarsius syrichta ENSTSYG00000013498 ortholog_one2one 3 retrogenes
retro_tsyr_1867, retro_tsyr_2163, retro_tsyr_848,
Tursiops truncatus ENSTTRG00000013447 ortholog_one2one 11 retrogenes
retro_ttru_105, retro_ttru_1195, retro_ttru_1577, retro_ttru_1628, retro_ttru_1639, retro_ttru_1653, retro_ttru_1677, retro_ttru_1731, retro_ttru_1892, retro_ttru_610, retro_ttru_916,
Vicugna pacos ENSVPAG00000005481 ortholog_one2one 1 retrogene
retro_vpac_541,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_158 96.34 100.00
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2. retro_opri_545 96.34 100.00
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3. retro_opri_1037 63.41 96.95
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Download FASTA sequences of all ENSOPRG00000006006 retrocopies