RetrogeneDB ID: | retro_tsyr_2163 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_98046:5170..5451(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF3 | ||
Ensembl ID: | ENSTSYG00000013498 | ||
Aliases: | None | ||
Description: | serine/arginine-rich splicing factor 3 [Source:HGNC Symbol;Acc:10785] |
Percent Identity: | 80. % |
Parental protein coverage: | 98.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRR-RERSL |
LCGC.VRVELSNGEKRSRNRGPPPSWGR.P.DD...RSPPPR.RSP.RRSFS.S.S.SLS..R..RERSL | |
Retrocopy | LCGCPVRVELSNGEKRSRNRGPPPSWGRHPWDDCHERSPPPRHRSPGRRSFSCSWSTSLSGERT<RERSL |
Parental | SRERNHKPSRSFSRSRSRSRSNERK |
SRERNHKPS.SFSRS...SRSNERK | |
Retrocopy | SRERNHKPSLSFSRSCNPSRSNERK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000040006 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000016062 | 5 retrocopies | |
Homo sapiens | ENSG00000112081 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000018193 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000004674 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000010671 | 6 retrocopies | |
Mustela putorius furo | ENSMPUG00000014215 | 1 retrocopy | |
Mus musculus | ENSMUSG00000071172 | 9 retrocopies | |
Otolemur garnettii | ENSOGAG00000000502 | 6 retrocopies | |
Ochotona princeps | ENSOPRG00000006006 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000000520 | 11 retrocopies | |
Sus scrofa | ENSSSCG00000001564 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014280 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000006848 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000013498 | 3 retrocopies |
retro_tsyr_1867, retro_tsyr_2163 , retro_tsyr_848,
|
Tursiops truncatus | ENSTTRG00000013447 | 11 retrocopies | |
Vicugna pacos | ENSVPAG00000005481 | 1 retrocopy |