RetrogeneDB ID: | retro_mmur_330 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_2418:935748..936471(-) | ||
Located in intron of: | ENSMICG00000017230 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSMICG00000004921 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 75.71 % |
Parental protein coverage: | 91.29 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLK-GRVFEVSLADLQNDEVAFRKFKLI-TED |
DPFSKK.W.DV..PA.F.IRN.G.TLVTRTQGTKIA.DGLK.G.VFEVS.ADLQN.EV.FRKFK.I.TED | |
Retrocopy | DPFSKKYWCDVREPAVFRIRNTGNTLVTRTQGTKIATDGLK<GPVFEVSPADLQNNEVVFRKFKMI>TED |
Parental | VQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLF-CVGFTKKRNNQIRKTSYAQHQ |
.QGKNCL.NFHGMDLT..KMCSMVKKWQTM..AH.DVKTTDGYLL..F..V.FTKK.N.QI.KTSYAQHQ | |
Retrocopy | DQGKNCLPNFHGMDLTHNKMCSMVKKWQTMSAAHADVKTTDGYLLHMF<LVSFTKKHNSQIQKTSYAQHQ |
Parental | QVRQIRKKMMEIMT-REVQTNDL-KEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKML-KKPKFELG |
QV.Q..KKM...MT..EVQTNDL.K..V.KLI.DSIGKD.EK.CQSI..LHD.F.R.V.ML.KKP.FELG | |
Retrocopy | QVHQLWKKMIDTMT<HEVQTNDL>KDIVHKLILDSIGKDTEKTCQSICLLHDIFFRTVMML>KKPRFELG |
Parental | KLMELHGEGSSSGKATGDETGAKVERADGYEPPVQES |
.LMEL.GEGSSS.KATGDETGAK.E.ADG.EPPVQES | |
Retrocopy | RLMELPGEGSSSRKATGDETGAKIE*ADGHEPPVQES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018425 | 11 retrocopies | |
Bos taurus | ENSBTAG00000009908 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000007990 | 7 retrocopies | |
Callithrix jacchus | ENSCJAG00000002268 | 7 retrocopies | |
Microcebus murinus | ENSMICG00000004921 | 9 retrocopies |
retro_mmur_1230, retro_mmur_1289, retro_mmur_193, retro_mmur_299, retro_mmur_330 , retro_mmur_526, retro_mmur_592, retro_mmur_626, retro_mmur_945,
|
Macaca mulatta | ENSMMUG00000021821 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000969 | 6 retrocopies | |
Mus musculus | ENSMUSG00000028081 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007011 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011893 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015088 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004235 | 8 retrocopies |