RetrogeneDB ID: | retro_amel_159 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192341.1:4403311..4403875(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSAMEG00000018425 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.42 % |
Parental protein coverage: | 71.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | DEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQT-MIEAHVDVKTTDGYLLRLFCVGFTKK |
DEVA..KFKL.TE.VQGKNCLT.FHGMDL..DKMCSMVKKWQ....EA.V.VKTTDGYLL.LF.V.FTK. | |
Retrocopy | DEVALKKFKLTTENVQGKNCLTSFHGMDLAHDKMCSMVKKWQM<VTEARVEVKTTDGYLLHLFGVSFTKN |
Parental | RNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKV |
..N.I.KT.YAQHQQ..QI.KKMMEIMT.EVQTNDLKEV.NKL.PD.I.KDIEKAC.SIY.LHDVF.RKV | |
Retrocopy | CQNSIQKTFYAQHQQFHQIQKKMMEIMT*EVQTNDLKEVINKLVPDTIRKDIEKACRSIYLLHDVFFRKV |
Parental | KMLKKPKFELGKLMELHGEGSSSG-KATGDETGAKVERADGYEPPVQESV |
KMLKKP.FELGKLME.HGEGS.SG.KA.GDET.AK.E.ADGYEPPVQESV | |
Retrocopy | KMLKKPRFELGKLMEFHGEGSNSG>KASGDETSAKIEQADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018425 | 11 retrocopies | |
Bos taurus | ENSBTAG00000009908 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000007990 | 7 retrocopies | |
Callithrix jacchus | ENSCJAG00000002268 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000003182 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000004921 | 9 retrocopies | |
Macaca mulatta | ENSMMUG00000021821 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000969 | 6 retrocopies | |
Mus musculus | ENSMUSG00000028081 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007011 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011893 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015088 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004235 | 8 retrocopies |