RetrogeneDB ID: | retro_amel_367 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192405.1:1851878..1852465(+) | ||
Located in intron of: | ENSAMEG00000003961 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSAMEG00000018425 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.75 % |
Parental protein coverage: | 74.62 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | VFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLL |
VFEVSLAD.QNDE..FRKFKLITED.Q.K..L.NFHGMDLT.DK.CS.VK..QT....HVDVKTTDGY.. | |
Retrocopy | VFEVSLADVQNDEGPFRKFKLITEDIQDKK-LRNFHGMDLTHDKTCSKVKTRQTTN*VHVDVKTTDGYSP |
Parental | RLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIY |
.LFCVGFTKK.N.QIRKTSYA.HQQV..IRK.M.EIM...VQ.NDLKEVVN.LIPDSI.KD.EKACQSIY | |
Retrocopy | CLFCVGFTKKCNYQIRKTSYAHHQQVC*IRKMMIEIMAQDVQINDLKEVVNTLIPDSIKKDTEKACQSIY |
Parental | PLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATG-DETGAKVERADGYEPPVQE |
PL.DVFVRKVKML..P.FELGKLM.L.GE.SSSGKATG..ET.A.VE.A.G.EPP.Q. | |
Retrocopy | PLCDVFVRKVKMLTQPHFELGKLMALCGEDSSSGKATG<GETSAQVEQASG*EPPIQD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018425 | 11 retrocopies | |
Bos taurus | ENSBTAG00000009908 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000007990 | 7 retrocopies | |
Callithrix jacchus | ENSCJAG00000002268 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000003182 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000004921 | 9 retrocopies | |
Macaca mulatta | ENSMMUG00000021821 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000969 | 6 retrocopies | |
Mus musculus | ENSMUSG00000028081 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007011 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011893 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015088 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004235 | 8 retrocopies |