Parental gene:

RPS3A, ENSAMEG00000018425

Aliases:None
Description:None
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL192370.1:778972..782898(+)


>ENSAMEG00000018425
ATGGCGGTCGGCAAGAACAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTGGTTGATCCATTTTCTAA
GAAAGATTGGTATGATGTCAAAGCGCCAGCTATGTTCAATATAAGAAATATTGGAAAAACACTAGTCACAAGAACTCAAG
GAACCAAAATCGCATCTGATGGCCTCAAGGGTCGTGTTTTTGAAGTGAGCCTGGCTGATCTGCAGAATGATGAAGTTGCC
TTTAGAAAATTCAAGCTAATTACTGAGGATGTTCAGGGCAAAAACTGCCTGACCAATTTCCATGGCATGGATCTTACCCG
TGACAAAATGTGCTCCATGGTCAAAAAATGGCAGACCATGATTGAAGCTCATGTTGATGTCAAGACTACCGATGGTTATT
TGCTTCGCCTGTTTTGTGTTGGTTTTACTAAAAAACGCAATAATCAGATTCGGAAGACCTCTTACGCTCAGCACCAGCAG
GTCCGCCAGATTCGGAAAAAGATGATGGAGATCATGACCCGAGAGGTGCAGACAAATGACTTGAAAGAAGTGGTCAATAA
ATTGATTCCAGACAGCATCGGAAAAGACATAGAAAAAGCTTGTCAGTCTATTTATCCACTCCATGATGTCTTCGTTAGAA
AAGTAAAAATGCTGAAGAAGCCCAAGTTTGAATTGGGAAAGCTCATGGAGCTTCATGGTGAAGGTAGTAGTTCTGGAAAA
GCTACTGGGGATGAGACCGGTGCTAAAGTTGAACGAGCTGATGGATATGAGCCACCAGTCCAAGAATCTGTTTAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009908 ortholog_one2one 3 retrogenes
retro_btau_1284, retro_btau_1733, retro_btau_233,
Canis familiaris ENSCAFG00000007990 ortholog_one2one 7 retrogenes
retro_cfam_103, retro_cfam_146, retro_cfam_169, retro_cfam_170, retro_cfam_179, retro_cfam_222, retro_cfam_77,
Callithrix jacchus ENSCJAG00000002268 ortholog_one2many 7 retrogenes
retro_cjac_2, retro_cjac_21, retro_cjac_249, retro_cjac_312, retro_cjac_337, retro_cjac_368, retro_cjac_78,
Gorilla gorilla ENSGGOG00000003182 ortholog_one2many 2 retrogenes
retro_ggor_70, retro_ggor_97,
Microcebus murinus ENSMICG00000004921 ortholog_one2one 9 retrogenes
retro_mmur_1230, retro_mmur_1289, retro_mmur_193, retro_mmur_299, retro_mmur_330, retro_mmur_526, retro_mmur_592, retro_mmur_626, retro_mmur_945,
Macaca mulatta ENSMMUG00000021821 possible_ortholog 1 retrogene
retro_mmul_2297,
Monodelphis domestica ENSMODG00000000969 ortholog_one2one 6 retrogenes
retro_mdom_1040, retro_mdom_1229, retro_mdom_1396, retro_mdom_1480, retro_mdom_627, retro_mdom_694,
Mus musculus ENSMUSG00000028081 possible_ortholog 2 retrogenes
retro_mmus_218, retro_mmus_254,
Oryctolagus cuniculus ENSOCUG00000007011 possible_ortholog 1 retrogene
retro_ocun_257,
Rattus norvegicus ENSRNOG00000011893 possible_ortholog 1 retrogene
retro_rnor_198,
Sarcophilus harrisii ENSSHAG00000015088 ortholog_one2many 2 retrogenes
retro_shar_777, retro_shar_95,
Vicugna pacos ENSVPAG00000004235 ortholog_one2one 8 retrogenes
retro_vpac_253, retro_vpac_31, retro_vpac_322, retro_vpac_439, retro_vpac_486, retro_vpac_497, retro_vpac_529, retro_vpac_88,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_159 78.42 71.21
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2. retro_amel_230 69.78 84.85
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3. retro_amel_367 74.75 74.62
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4. retro_amel_863 54.34 80.30
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5. retro_amel_1333 71.10 63.64
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6. retro_amel_1361 73.71 65.15
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7. retro_amel_1380 75.27 68.56
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8. retro_amel_1514 56.12 73.11
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9. retro_amel_1697 76.92 82.20
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10. retro_amel_1732 74.40 62.88
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11. retro_amel_1739 76.14 98.86
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Download FASTA sequences of all ENSAMEG00000018425 retrocopies