RetrogeneDB ID: | retro_amel_1333 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193209.1:613676..614180(-) | ||
Located in intron of: | ENSAMEG00000017897 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSAMEG00000018425 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.1 % |
Parental protein coverage: | 63.64 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | LTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRK |
L.N.HGMDLT.DKMCSMVKK.QT..EAHVDVKTTD.YLL.LFCV.F..K.NN.I..TS.AQHQQV.QI.K | |
Retrocopy | LVN*HGMDLTSDKMCSMVKK*QTLTEAHVDVKTTDSYLLHLFCVDFS*KCNNHIQNTS*AQHQQV-QIQK |
Parental | KMMEIMT-REVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVR-KVKMLKKPKFELGK--LMELH |
K..EIMT.R.VQTNDLK.VVNKLIP.SIGKDI.K.C.SI.PLHDVFVR.K.K..K......GK..LM.LH | |
Retrocopy | KITEIMT<RDVQTNDLKGVVNKLIPGSIGKDIQKGCPSIHPLHDVFVR<KSKNAKEAQV*TGKRKLMKLH |
Parental | GEGSSSGKATGDETGA-KVERADGYEPPVQESV |
.EGS.SGKAT.DETG..KVE..DGYE..VQESV | |
Retrocopy | DEGSKSGKATRDETGI<KVEQTDGYELLVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018425 | 11 retrocopies |
retro_amel_1333 , retro_amel_1361, retro_amel_1380, retro_amel_1514, retro_amel_159, retro_amel_1697, retro_amel_1732, retro_amel_1739, retro_amel_230, retro_amel_367, retro_amel_863,
|
Bos taurus | ENSBTAG00000009908 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000007990 | 7 retrocopies | |
Callithrix jacchus | ENSCJAG00000002268 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000003182 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000004921 | 9 retrocopies | |
Macaca mulatta | ENSMMUG00000021821 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000969 | 6 retrocopies | |
Mus musculus | ENSMUSG00000028081 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007011 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011893 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015088 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004235 | 8 retrocopies |