RetrogeneDB ID: | retro_amel_230 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192360.1:1236700..1237365(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSAMEG00000018425 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.78 % |
Parental protein coverage: | 84.85 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | IRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKM |
I.NIGKTL.TRTQGTKIASDGLKG.VFEV.LADLQN...A.RK.KLITED.QGKNCLT.FHGMDL..DKM | |
Retrocopy | IINIGKTLMTRTQGTKIASDGLKGIVFEVNLADLQN-KIACRKLKLITEDIQGKNCLTYFHGMDLICDKM |
Parental | CSMVKKWQ-TMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTN |
CS..K.WQ..MIE.HV.VKTT.GYLL.L.C.GFTK..NNQI...SY..HQ...QI.K....IMT.EV..N | |
Retrocopy | CSIIKIWQ<AMIEVHVTVKTTEGYLLHLLCIGFTKNCNNQIWNSSYT*HQHICQIQK-IR*IMTLEVPIN |
Parental | DLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAK |
DLK.V.NKLIPDSIGKDIE..CQ.IYPLH..FVRKV.M.K.PKFELGKL.E.HG..SS..K.T..E.GAK | |
Retrocopy | DLKAVANKLIPDSIGKDIENVCQYIYPLHGIFVRKVQMMKRPKFELGKLREFHGDSSSLEKTTENEAGAK |
Parental | VERADGYEPPVQESV |
VE.AD.Y..PV..SV | |
Retrocopy | VEQADEYKSPV*KSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018425 | 11 retrocopies | |
Bos taurus | ENSBTAG00000009908 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000007990 | 7 retrocopies | |
Callithrix jacchus | ENSCJAG00000002268 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000003182 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000004921 | 9 retrocopies | |
Macaca mulatta | ENSMMUG00000021821 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000969 | 6 retrocopies | |
Mus musculus | ENSMUSG00000028081 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007011 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011893 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015088 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004235 | 8 retrocopies |