RetrogeneDB ID: | retro_vpac_322 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_790:318363..319038(-) | ||
Located in intron of: | ENSVPAG00000009366 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSVPAG00000004235 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 63.2 % |
Parental protein coverage: | 85.98 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | MFNIRNVGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTR |
...I....K.LV.RT.GTKI.SDGLK..VFEV..ADL.NDEVAFRKFKLITE.VQGKN...NFHG.DLT. | |
Retrocopy | LYSI*KILKKLVMRT*GTKITSDGLKNHVFEVCFADLENDEVAFRKFKLITENVQGKNYPSNFHGTDLTC |
Parental | DKMC-SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYA-QHQQVRQIRKKMMEIMTRE |
DKMC......WQ.M..AHVDVKT..GY.L.LFCVGFT.KRN.Q..KTS.A...Q......K.M..I.... | |
Retrocopy | DKMC>ARXXXWQPMTDAHVDVKTAGGY*LYLFCVGFT*KRNSQMQKTSHA>HQQDCQIQKKMM-KIISQQ |
Parental | VQTNDLKEVVNKLIPDSIGKDIEKACQSI-YPLHDVFVRKVKMLKKPK-FELGKLMELHGEGSSSGKATG |
V.TND.K.V.NKLI.DS.GKDIEK.CQS...P.HD.F..K.KML..P..FELGK....HGEGS...KATG | |
Retrocopy | VRTNDFKKVANKLISDSVGKDIEKVCQSSNLPYHD-FDSKAKML-NPQ>FELGKFV-YHGEGSGFAKATG |
Parental | DETGAKVERADGYEPPVQESV |
D.TGAKVE.ADGYEPPVQ.SV | |
Retrocopy | DKTGAKVEQADGYEPPVQKSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018425 | 11 retrocopies | |
Bos taurus | ENSBTAG00000009908 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000007990 | 7 retrocopies | |
Callithrix jacchus | ENSCJAG00000002268 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000003182 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000004921 | 9 retrocopies | |
Macaca mulatta | ENSMMUG00000021821 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000969 | 6 retrocopies | |
Mus musculus | ENSMUSG00000028081 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007011 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011893 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015088 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004235 | 8 retrocopies |
retro_vpac_253, retro_vpac_31, retro_vpac_322 , retro_vpac_439, retro_vpac_486, retro_vpac_497, retro_vpac_529, retro_vpac_88,
|