Parental gene:

RPS3A, ENSVPAG00000004235

Aliases:None
Description:ribosomal protein S3A [Source:HGNC Symbol;Acc:10421]
Organism:Alpaca (Vicugna pacos)
Coordinates:GeneScaffold_2712:1103504..1107314(+)


>ENSVPAG00000004235
ATGGCGGTTGGCAAGAACAAGCGCCTGACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTGGTTGATCCATTTTCTAA
GAAAGATTGGTATGACGTGAAAGCACCAGCTATGTTCAATATAAGAAATGTTGGAAAAACACTAGTCACGAGAACGCAAG
GAACCAAAATTGCATCTGATGGCCTCAAGGGTCGTGTTTTTGAAGTGAGCCTTGCTGATCTGCAGAATGATGAAGTTGCG
TTTAGAAAATTCAAGCTAATTACTGAGGATGTTCAGGGCAAAAACTGTCTGACTAATTTCCATGGCATGGATCTTACCCG
TGACAAAATGTGCTCCATGGTCAAAAAATGGCAGACCATGATTGAAGCTCACGTTGATGTCAAGACTACCGATGGCTATT
TGCTTCGTCTATTCTGTGTGGGTTTTACTAAAAAACGCAACAATCAGATTCGGAAGACCTCTTATGCCCAGCACCAACAG
GTCCGCCAAATCCGGAAGAAGATGATGGAAATCATGACCCGAGAGGTGCAGACAAATGACTTGAAAGAGGTGGTCAATAA
ATTGATTCCAGACAGCATTGGAAAAGACATAGAAAAGGCTTGCCAATCTATTTATCCACTCCATGATGTCTTTGTTAGAA
AAGTAAAAATGCTGAAGAAGCCCAAGTTTGAATTGGGAAAACTCATGGAGCTACATGGTGAAGGGAGTAGTTCTGGAAAA
GCTACTGGGGATGAGACAGGTGCTAAAGTTGAACGAGCTGATGGATATGAGCCGCCAGTCCAAGAATCTGTTTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018425 ortholog_one2one 11 retrogenes
retro_amel_1333, retro_amel_1361, retro_amel_1380, retro_amel_1514, retro_amel_159, retro_amel_1697, retro_amel_1732, retro_amel_1739, retro_amel_230, retro_amel_367, retro_amel_863,
Bos taurus ENSBTAG00000009908 ortholog_one2one 3 retrogenes
retro_btau_1284, retro_btau_1733, retro_btau_233,
Canis familiaris ENSCAFG00000007990 ortholog_one2one 7 retrogenes
retro_cfam_103, retro_cfam_146, retro_cfam_169, retro_cfam_170, retro_cfam_179, retro_cfam_222, retro_cfam_77,
Callithrix jacchus ENSCJAG00000002268 ortholog_one2many 7 retrogenes
retro_cjac_2, retro_cjac_21, retro_cjac_249, retro_cjac_312, retro_cjac_337, retro_cjac_368, retro_cjac_78,
Gorilla gorilla ENSGGOG00000003182 ortholog_one2many 2 retrogenes
retro_ggor_70, retro_ggor_97,
Microcebus murinus ENSMICG00000004921 ortholog_one2one 9 retrogenes
retro_mmur_1230, retro_mmur_1289, retro_mmur_193, retro_mmur_299, retro_mmur_330, retro_mmur_526, retro_mmur_592, retro_mmur_626, retro_mmur_945,
Macaca mulatta ENSMMUG00000021821 possible_ortholog 1 retrogene
retro_mmul_2297,
Monodelphis domestica ENSMODG00000000969 ortholog_one2one 6 retrogenes
retro_mdom_1040, retro_mdom_1229, retro_mdom_1396, retro_mdom_1480, retro_mdom_627, retro_mdom_694,
Mus musculus ENSMUSG00000028081 possible_ortholog 2 retrogenes
retro_mmus_218, retro_mmus_254,
Oryctolagus cuniculus ENSOCUG00000007011 possible_ortholog 1 retrogene
retro_ocun_257,
Rattus norvegicus ENSRNOG00000011893 possible_ortholog 1 retrogene
retro_rnor_198,
Sarcophilus harrisii ENSSHAG00000015088 ortholog_one2many 2 retrogenes
retro_shar_777, retro_shar_95,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_vpac_31 57.75 68.94
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2. retro_vpac_88 72.41 53.41
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3. retro_vpac_253 72.08 57.58
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4. retro_vpac_322 63.20 85.98
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5. retro_vpac_439 52.00 81.44
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6. retro_vpac_486 78.66 90.15
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7. retro_vpac_497 76.73 91.67
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8. retro_vpac_529 77.48 98.86
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Download FASTA sequences of all ENSVPAG00000004235 retrocopies