RetrogeneDB ID: | retro_vpac_497 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_253300:181..906(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSVPAG00000004235 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 76.73 % |
Parental protein coverage: | 91.67 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | VGKNKRLTKGGKKGAK-KKVVDPFSKKDWYDVKAPAMFNIRNVGKTLVTRTQGTKIASDGLKGRVFEVSL |
V.KN..LTKG.K..AK....V.P.SKKDWYDV.APAMFNIR..GKTL.TRTQG.KI..DG.KG.VF.VSL | |
Retrocopy | VSKNNHLTKGSKTEAK>R*EVNPLSKKDWYDVTAPAMFNIRYIGKTLITRTQGMKITPDGFKGHVFQVSL |
Parental | ADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVK-KWQTMIEAHVDVKTTDGYLLRLFCV |
ADLQNDEVA.R.FKLITEDVQGKNCLT.FHG.DLT..KMCSMVK.KWQTMIEAHVDVK..DGYLLRLFCV | |
Retrocopy | ADLQNDEVAAREFKLITEDVQGKNCLTSFHGIDLTSNKMCSMVK<KWQTMIEAHVDVKPLDGYLLRLFCV |
Parental | GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSI-YPLHD |
GFTK..NNQI.KTSY.QHQ.V.QIRK.M.EI.T..VQ.NDL.EVV.KLIP.SIGKD.EKACQSI.YPL.D | |
Retrocopy | GFTKEHNNQIQKTSYIQHQ*VCQIRKIMVEITTQVVQKNDLEEVVSKLIPQSIGKDPEKACQSI<YPLSD |
Parental | VFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD |
VFVR.VK.L...KFELGKL.ELHGEGSS.G.ATGD | |
Retrocopy | VFVREVKVLNQSKFELGKLTELHGEGSSFGNATGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018425 | 11 retrocopies | |
Bos taurus | ENSBTAG00000009908 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000007990 | 7 retrocopies | |
Callithrix jacchus | ENSCJAG00000002268 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000003182 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000004921 | 9 retrocopies | |
Macaca mulatta | ENSMMUG00000021821 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000969 | 6 retrocopies | |
Mus musculus | ENSMUSG00000028081 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007011 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011893 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015088 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004235 | 8 retrocopies |
retro_vpac_253, retro_vpac_31, retro_vpac_322, retro_vpac_439, retro_vpac_486, retro_vpac_497 , retro_vpac_529, retro_vpac_88,
|