Parental gene:

RPS3A, ENSBTAG00000009908

Aliases:RPS3A, RPS3AE
Description:40S ribosomal protein S3a [Source:UniProtKB/Swiss-Prot;Acc:Q56JV9]
Organism:Cow (Bos taurus)
Coordinates:17:6703059..6707745(-)


>ENSBTAG00000009908
ATGGCGGTCGGCAAGAATAAGCGCCTTACGAAAGGAGGTAAAAAGGGAGCCAAGAAGAAAGTGGTTGACCCATTTTCTAA
AAAAGATTGGTATGATGTGAAAGCACCAGCTATGTTCAACATAAGGAATATTGGGAAAACATTGGTCACGAGAACTCAAG
GAACCAAAATCGCGTCTGATGGCCTCAAAGGTCGTGTTTTTGAAGTGAGTCTTGCTGATCTGCAGAATGATGAAGTAGCG
TTTAGAAAATTCAAGCTAATTACTGAGGATGTTCAGGGCAAAAACTGCCTGACTAATTTTCATGGTATGGATCTTACCCG
TGACAAAATGTGCTCCATGGTCAAAAAGTGGCAGACCATGATCGAAGCTCACGTTGATGTCAAGACTACCGATGGTTACT
TGCTTCGTCTGTTCTGTGTGGGTTTTACTAAAAAGCGCAACAATCAGATTCGGAAGACCTCTTACGCCCAGCACCAGCAG
GTGCGCCAGATCCGCAAGAAGATGATGGAAATCATGACCCGAGAGGTGCAGACAAATGACTTGAAAGAGGTGGTCAATAA
ATTGATTCCAGATAGCATTGGAAAAGACATAGAAAAGGCTTGCCAATCTATTTATCCACTCCATGATGTCTTCGTTAGAA
AAGTAAAAATGCTGAAGAAGCCCAAATTTGAATTGGGAAAACTCATGGAGCTACATGGTGAAGGTAGTAGTTCTGGAAAA
GCTACTGGGGATGAGACAGGTGCTAAAGTTGAACGAGCTGATGGATACGAGCCACCAGTCCAAGAATCGGTTTAA

Library Parental gene expression (RPM)
SRP017611_brain 176 .23 RPM
SRP017611_kidney 547 .73 RPM
SRP017611_liver 185 .00 RPM
ERP005899_muscle 1737 .76 RPM
ERP005899_liver 323 .49 RPM
SRP030211_testis 302 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018425 ortholog_one2one 11 retrogenes
retro_amel_1333, retro_amel_1361, retro_amel_1380, retro_amel_1514, retro_amel_159, retro_amel_1697, retro_amel_1732, retro_amel_1739, retro_amel_230, retro_amel_367, retro_amel_863,
Canis familiaris ENSCAFG00000007990 ortholog_one2one 7 retrogenes
retro_cfam_103, retro_cfam_146, retro_cfam_169, retro_cfam_170, retro_cfam_179, retro_cfam_222, retro_cfam_77,
Callithrix jacchus ENSCJAG00000002268 ortholog_one2many 7 retrogenes
retro_cjac_2, retro_cjac_21, retro_cjac_249, retro_cjac_312, retro_cjac_337, retro_cjac_368, retro_cjac_78,
Dipodomys ordii ENSDORG00000002250 possible_ortholog 10 retrogenes
retro_dord_142, retro_dord_168, retro_dord_193, retro_dord_209, retro_dord_229, retro_dord_314, retro_dord_380, retro_dord_752, retro_dord_757, retro_dord_95,
Erinaceus europaeus ENSEEUG00000004994 possible_ortholog 4 retrogenes
retro_eeur_297, retro_eeur_510, retro_eeur_517, retro_eeur_66,
Gorilla gorilla ENSGGOG00000003182 ortholog_one2many 2 retrogenes
retro_ggor_70, retro_ggor_97,
Microcebus murinus ENSMICG00000004921 ortholog_one2one 9 retrogenes
retro_mmur_1230, retro_mmur_1289, retro_mmur_193, retro_mmur_299, retro_mmur_330, retro_mmur_526, retro_mmur_592, retro_mmur_626, retro_mmur_945,
Macaca mulatta ENSMMUG00000021821 possible_ortholog 1 retrogene
retro_mmul_2297,
Monodelphis domestica ENSMODG00000000969 ortholog_one2many 6 retrogenes
retro_mdom_1040, retro_mdom_1229, retro_mdom_1396, retro_mdom_1480, retro_mdom_627, retro_mdom_694,
Mus musculus ENSMUSG00000028081 possible_ortholog 2 retrogenes
retro_mmus_218, retro_mmus_254,
Oryctolagus cuniculus ENSOCUG00000007011 possible_ortholog 1 retrogene
retro_ocun_257,
Rattus norvegicus ENSRNOG00000011893 possible_ortholog 1 retrogene
retro_rnor_198,
Sarcophilus harrisii ENSSHAG00000015088 ortholog_many2many 2 retrogenes
retro_shar_777, retro_shar_95,
Vicugna pacos ENSVPAG00000004235 ortholog_one2one 8 retrogenes
retro_vpac_253, retro_vpac_31, retro_vpac_322, retro_vpac_439, retro_vpac_486, retro_vpac_497, retro_vpac_529, retro_vpac_88,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_233 98.48 100.00
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2. retro_btau_1284 89.40 81.82
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3. retro_btau_1733 88.72 50.38
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Download FASTA sequences of all ENSBTAG00000009908 retrocopies