RetrogeneDB ID: | retro_amel_863 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192689.1:626874..627495(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSAMEG00000018425 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.34 % |
Parental protein coverage: | 80.3 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 7 |
Parental | KNKRLTKGGK-KGAKKKVVDPFSKKDWYDVK-APAMFNIRNIGK-TLVTRTQGTKIASDGLKGRVFEVSL |
K....TKGGK.K..KKKV...FSK.D.Y..K..PA.F.I.N..K...V.R...TKIASD.L.G....V.. | |
Retrocopy | KKELPTKGGK<KETKKKVAGSFSKEDRYGGK<TPAVFDIGNTEK<MVVSRPKETKIASDCLRGH--KVRP |
Parental | ADLQNDEVAFRKFKLITEDVQGK-NCLTNFHGMDLTRDK-MCSMVKK-WQTMIEAHVDVKTTDGYLLRLF |
..LQN.EV........TED.QG..NC..NF...DLT..K.MCS.VKK.WQTM.EAHV..KTT..Y.L.LF | |
Retrocopy | VALQN-EVVLENPN*TTEDIQGE<NCPPNFYDVDLTHEK<MCSLVKK>WQTMTEAHVTIKTTGSYMLHLF |
Parental | CVGFTKKR-NNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL |
CVGF..K..N.QI.KTS...H.QV.QI..KM.E.MT.EVQTN..K..V..LI..S.G.DI.K.C.S.YPL | |
Retrocopy | CVGFILKK>NDQIWKTSHTRHLQVHQI-QKMIEVMTQEVQTNGFKDAVSNLITVSTGQDIGKTCPSTYPL |
Parental | HDVFVRKVK |
.D.F.RKVK | |
Retrocopy | CDGFIRKVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018425 | 11 retrocopies | |
Bos taurus | ENSBTAG00000009908 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000007990 | 7 retrocopies | |
Callithrix jacchus | ENSCJAG00000002268 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000003182 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000004921 | 9 retrocopies | |
Macaca mulatta | ENSMMUG00000021821 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000969 | 6 retrocopies | |
Mus musculus | ENSMUSG00000028081 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007011 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011893 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015088 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004235 | 8 retrocopies |