Parental gene: | RPS3A, ENSCAFG00000007990 |
| Aliases: | None |
| Description: | 40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:F2Z4Q5] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 15:49066730..49070758(+) |
>ENSCAFG00000007990
ATGGCGGTCGGCAAGAACAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTGGTTGATCCATTTTCTAA
GAAAGATTGGTATGATGTGAAAGCGCCAGCTATGTTCAATATAAGAAATATTGGAAAAACACTAGTCACAAGAACTCAAG
GAACCAAAATTGCGTCTGATGGTCTCAAGGGTCGGGTTTTTGAAGTTAGCCTTGCTGATCTGCAGAATGATGAAGTTGCA
TTTAGGAAATTCAAGCTAATCACTGAGGATGTGCAGGGCAAAAACTGCCTGACTAATTTTCATGGCATGGATCTTACCCG
TGACAAAATGTGCTCCATGGTCAAAAAATGGCAGACCATGATTGAAGCTCATGTTGATGTAAAGACTACCGATGGTTATT
TGCTTCGTCTATTTTGTGTTGGTTTTACTAAAAAACGCAATAATCAGATTCGGAAGACCTCTTACGCTCAGCACCAACAG
GTCCGCCAAATTCGGAAAAAGATGATGGAAATCATGACCCGAGAGGTGCAAACAAATGACTTGAAAGAAGTGGTCAATAA
ACTGATTCCAGACAGCATCGGAAAAGATATAGAAAAAGCTTGTCAGTCTATTTATCCACTCCATGATGTTTTTGTTAGAA
AAGTAAAAATGCTGAAGAAGCCCAAGTTTGAATTGGGAAAACTCATGGAGCTTCATGGTGAAGGTAGTAGTTCTGGAAAA
GCTACGGGGGATGAGACCGGTGCTAAAGTTGAACGAGCTGATGGATATGAACCACCAGTCCAAGAATCTGTTTAA
ATGGCGGTCGGCAAGAACAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTGGTTGATCCATTTTCTAA
GAAAGATTGGTATGATGTGAAAGCGCCAGCTATGTTCAATATAAGAAATATTGGAAAAACACTAGTCACAAGAACTCAAG
GAACCAAAATTGCGTCTGATGGTCTCAAGGGTCGGGTTTTTGAAGTTAGCCTTGCTGATCTGCAGAATGATGAAGTTGCA
TTTAGGAAATTCAAGCTAATCACTGAGGATGTGCAGGGCAAAAACTGCCTGACTAATTTTCATGGCATGGATCTTACCCG
TGACAAAATGTGCTCCATGGTCAAAAAATGGCAGACCATGATTGAAGCTCATGTTGATGTAAAGACTACCGATGGTTATT
TGCTTCGTCTATTTTGTGTTGGTTTTACTAAAAAACGCAATAATCAGATTCGGAAGACCTCTTACGCTCAGCACCAACAG
GTCCGCCAAATTCGGAAAAAGATGATGGAAATCATGACCCGAGAGGTGCAAACAAATGACTTGAAAGAAGTGGTCAATAA
ACTGATTCCAGACAGCATCGGAAAAGATATAGAAAAAGCTTGTCAGTCTATTTATCCACTCCATGATGTTTTTGTTAGAA
AAGTAAAAATGCTGAAGAAGCCCAAGTTTGAATTGGGAAAACTCATGGAGCTTCATGGTGAAGGTAGTAGTTCTGGAAAA
GCTACGGGGGATGAGACCGGTGCTAAAGTTGAACGAGCTGATGGATATGAACCACCAGTCCAAGAATCTGTTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 81 .06 RPM |
| SRP017611_kidney | 772 .37 RPM |
| SRP017611_liver | 161 .41 RPM |
| SRP012049_cerebellum | 249 .60 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000018425 | ortholog_one2one | 11 retrogenes | |
| Bos taurus | ENSBTAG00000009908 | ortholog_one2one | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000002268 | ortholog_one2many | 7 retrogenes | |
| Dipodomys ordii | ENSDORG00000002250 | possible_ortholog | 10 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000004994 | possible_ortholog | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000003182 | ortholog_one2many | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000004921 | ortholog_one2one | 9 retrogenes | |
| Macaca mulatta | ENSMMUG00000021821 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000000969 | ortholog_one2many | 6 retrogenes | |
| Mus musculus | ENSMUSG00000028081 | possible_ortholog | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000007011 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000011893 | possible_ortholog | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000015088 | ortholog_many2many | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000004235 | ortholog_one2one | 8 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_77 | 96.59 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_103 | 98.86 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_146 | 97.73 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_169 | 97.35 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_170 | 96.20 | 99.62 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cfam_179 | 98.86 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cfam_222 | 92.05 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000007990 retrocopies