RetrogeneDB ID: | retro_vpac_439 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_192:728328..728972(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSVPAG00000004235 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 52. % |
Parental protein coverage: | 81.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 8 |
Parental | MAVGKNKRLTKGGKKG-AKKKVVDPFSKKDWYDVK-APAMFNIRNVGKTLVTRTQGTKI-ASDGLKGRVF |
MAVGK.K.L.....KG.AK..VV...S.K.WYD.K.AP.M..I.N.GKTLVTRTQ..K...SD.LK..VF | |
Retrocopy | MAVGKEKYLMERQQKG>AKTAVVNLLSQKAWYDIK<APVMLLIKNIGKTLVTRTQEAKL<VSDDLKDCVF |
Parental | EVSLADLQNDEVAFRKFKLITEDVQ-GKNCLTNFHGMDLTRDKMCSMVKKW-QTMIEAHVDVKTTDGYLL |
EVS.ADLQN....FRK.K.....V...KNCL.N.H.M........S..........EA.V.VKT..GYL. | |
Retrocopy | EVSIADLQNNGMEFRKLKIVNKNVL>AKNCLCNSHEMNFVVERIYSILXXXLKALLEASV-VKTIHGYLF |
Parental | RLFCVGFTKKRN-NQI-RKTSYAQHQQVRQIRKKMMEIMT-REVQTNDLK-EVVNKLIPDSIGKDIEKAC |
.LFCVGF..K...N....KTS.A....V..I.KKM.EIMT....QTN.LK.E.V.KLIP.S.G..IEKA. | |
Retrocopy | CLFCVGFQSKTS<NNLIQKTSCAWVREVCEIQKKMVEIMT<LKRQTNGLK<EEVSKLIPNSTGDSIEKAG |
Parental | Q-SIYPLHDVFVRKV |
..S..PLHD..VRKV | |
Retrocopy | N<SVHPLHDLLVRKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018425 | 11 retrocopies | |
Bos taurus | ENSBTAG00000009908 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000007990 | 7 retrocopies | |
Callithrix jacchus | ENSCJAG00000002268 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000003182 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000004921 | 9 retrocopies | |
Macaca mulatta | ENSMMUG00000021821 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000969 | 6 retrocopies | |
Mus musculus | ENSMUSG00000028081 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007011 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011893 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015088 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004235 | 8 retrocopies |
retro_vpac_253, retro_vpac_31, retro_vpac_322, retro_vpac_439 , retro_vpac_486, retro_vpac_497, retro_vpac_529, retro_vpac_88,
|