RetrogeneDB ID: | retro_cfam_222 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 23:27557225..27558017(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000024369 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSCAFG00000007990 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S3a [Source:UniProtKB/TrEMBL;Acc:F2Z4Q5] |
Percent Identity: | 92.05 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
MAV.KNKRL.KGG.KGAKKKVVDPFSKKD.Y.VK.P.MFN.RNIGKTLVTRTQGTKIASDGLKG.VFEVS | |
Retrocopy | MAVDKNKRLMKGGTKGAKKKVVDPFSKKDCYGVKVPTMFNTRNIGKTLVTRTQGTKIASDGLKGHVFEVS |
Parental | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV |
LADLQN.EVAFRKFKLITEDVQGKNCLTNFHGMD.TRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFC. | |
Retrocopy | LADLQN-EVAFRKFKLITEDVQGKNCLTNFHGMDPTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCF |
Parental | GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV |
GFTKKRNNQ..KTSYAQ.QQVRQI.KKMMEIMT.EVQTNDLKEVVNKLIP.SIGKD.EKACQSIYPLHDV | |
Retrocopy | GFTKKRNNQVWKTSYAQCQQVRQIWKKMMEIMTQEVQTNDLKEVVNKLIPGSIGKDLEKACQSIYPLHDV |
Parental | FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
FVRKVKMLKKPKF.LGKLMELHGEGSSSGKAT.DETGAKVERADGYEPPVQESV | |
Retrocopy | FVRKVKMLKKPKFQLGKLMELHGEGSSSGKATADETGAKVERADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 249 .60 RPM |
SRP017611_brain | 0 .00 RPM | 81 .06 RPM |
SRP017611_kidney | 0 .00 RPM | 772 .37 RPM |
SRP017611_liver | 0 .00 RPM | 161 .41 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018425 | 11 retrocopies | |
Bos taurus | ENSBTAG00000009908 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000007990 | 7 retrocopies |
retro_cfam_103, retro_cfam_146, retro_cfam_169, retro_cfam_170, retro_cfam_179, retro_cfam_222 , retro_cfam_77,
|
Callithrix jacchus | ENSCJAG00000002268 | 7 retrocopies | |
Dipodomys ordii | ENSDORG00000002250 | 10 retrocopies | |
Erinaceus europaeus | ENSEEUG00000004994 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000003182 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000004921 | 9 retrocopies | |
Macaca mulatta | ENSMMUG00000021821 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000969 | 6 retrocopies | |
Mus musculus | ENSMUSG00000028081 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007011 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011893 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015088 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004235 | 8 retrocopies |