RetrogeneDB ID: | retro_amel_1739 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL194146.1:239552..240321(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSAMEG00000018425 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.14 % |
Parental protein coverage: | 98.86 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | GKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLAD |
G.NK.L.K.GKKG.KKKV.DPFSKKDWY..KAPAMFN.RNIGKTL.T.TQGT.I.SDGL.G.VFEVSLAD | |
Retrocopy | GANKHLMKDGKKGIKKKVIDPFSKKDWYGGKAPAMFNTRNIGKTLIT*TQGTQITSDGLRGHVFEVSLAD |
Parental | LQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT |
L.NDEVAFRKFKLITEDVQGKN.LT..HGMDLT.DKMCSM...WQTM.E.HVDVKTTDGYL..LFCVGFT | |
Retrocopy | LWNDEVAFRKFKLITEDVQGKNYLTD-HGMDLTCDKMCSMIRTWQTMTEVHVDVKTTDGYLPHLFCVGFT |
Parental | KKR-NNQIRKTSYAQHQQVRQIRKKMMEI-MTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVF |
K...NNQI.KT.Y.QHQQ.....KKMMEI.MT.EVQTNDLKE.VNKLIPDS.GKDIEK.C.SIYPL.D.. | |
Retrocopy | KNN>NNQIQKTFYTQHQQ--DLQKKMMEI>MT*EVQTNDLKEMVNKLIPDSTGKDIEKTCHSIYPLQD-- |
Parental | VRKVKMLKKPKFELGKLMELHGEGSSSGKATGDET-GAKVERADGYEPPVQESV |
VRKVKMLKKPKFELGKL.E....GS.SGK.T..E....K.E.ADGYEPPVQES. | |
Retrocopy | VRKVKMLKKPKFELGKLTEYYTAGSNSGKVTAGEN<HTKAE*ADGYEPPVQESI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018425 | 11 retrocopies |
retro_amel_1333, retro_amel_1361, retro_amel_1380, retro_amel_1514, retro_amel_159, retro_amel_1697, retro_amel_1732, retro_amel_1739 , retro_amel_230, retro_amel_367, retro_amel_863,
|
Bos taurus | ENSBTAG00000009908 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000007990 | 7 retrocopies | |
Callithrix jacchus | ENSCJAG00000002268 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000003182 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000004921 | 9 retrocopies | |
Macaca mulatta | ENSMMUG00000021821 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000969 | 6 retrocopies | |
Mus musculus | ENSMUSG00000028081 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007011 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011893 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015088 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004235 | 8 retrocopies |