RetrogeneDB ID: | retro_mmur_827 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | scaffold_107177:80..470(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMICG00000014647 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3A | ||
Ensembl ID: | ENSMICG00000010469 | ||
Aliases: | None | ||
Description: | H3 histone, family 3A [Source:HGNC Symbol;Acc:4764] |
Percent Identity: | 74.07 % |
Parental protein coverage: | 97.06 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE-LLIRKLPFQRLVR |
K.TA.KS..G...RK.L..KAA.K.APSTG.VKKP.RY.PGTV.LREIR.YQKST......KLPFQRLVR | |
Retrocopy | K*TASKSSSG---RKRLDIKAAWKRAPSTGRVKKPYRYKPGTVTLREIRSYQKSTA<FGFHKLPFQRLVR |
Parental | EIAQDFKTDLRFQSAAIGALQEASEAYL-VGLFEDTNLCAIHAKRV-TIMPKDIQLARRIRGERA |
EIA.DFKTDL.FQS..IGALQEASEAYL.VGLFEDTN..A.HAKRV.TIMPKDIQLA..IRG.RA | |
Retrocopy | EIAEDFKTDLHFQSETIGALQEASEAYLEVGLFEDTNP*AVHAKRV>TIMPKDIQLAHCIRGKRA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000024561 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000004916 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000016119 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000013796 | 1 retrocopy | |
Felis catus | ENSFCAG00000003617 | 4 retrocopies | |
Felis catus | ENSFCAG00000030424 | 5 retrocopies | |
Gadus morhua | ENSGMOG00000014306 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002139 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000010469 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000031483 | 9 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001577 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000025933 | 14 retrocopies | |
Pongo abelii | ENSPPYG00000008636 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008459 | 2 retrocopies |