RetrogeneDB ID: | retro_shar_597 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL856719.1:1966360..1966728(+) | ||
Located in intron of: | ENSSHAG00000015688 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSSHAG00000018731 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:HGNC Symbol;Acc:10315] |
Percent Identity: | 77.17 % |
Parental protein coverage: | 97.66 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VKKSVMKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQF-LQERIKVNGKAGNLGGGVVTIERSKSKITV |
VKKSVMKGGKK.KQVLKFTLD...PVE.GIMDAA.FEQF.LQE.IKVN.KA..LGG.V...ERSKSKIT. | |
Retrocopy | VKKSVMKGGKKRKQVLKFTLDFIYPVEYGIMDAASFEQF>LQE*IKVNVKASDLGGRV---ERSKSKITM |
Parental | TSEVPFSKR-YLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEEED |
.SEVPFSK..YLKYL.KKYLKKNN..DWL.V.A.SKESYEL.YFQ.NQDEEEE..ED | |
Retrocopy | MSEVPFSKM>YLKYLIKKYLKKNNFWDWLPVMASSKESYELWYFQFNQDEEEEKKED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009864 | 7 retrocopies | |
Bos taurus | ENSBTAG00000014423 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000027739 | 10 retrocopies | |
Macropus eugenii | ENSMEUG00000008801 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018347 | 12 retrocopies | |
Monodelphis domestica | ENSMODG00000006225 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000007087 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000001951 | 11 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000018731 | 1 retrocopy |
retro_shar_597 ,
|
Sus scrofa | ENSSSCG00000003367 | 4 retrocopies |