RetrogeneDB ID: | retro_amel_1793 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL194353.1:51087..51472(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSAMEG00000009864 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:HGNC Symbol;Acc:10315] |
Percent Identity: | 62.6 % |
Parental protein coverage: | 97.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | PVVVFKKKKLVAKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSK |
P..V..KK..V..G....KQVLKFTLDCTH.VEDGIMDAANFEQFLQERI.VNGKAGNL.G.VVT.ER.K | |
Retrocopy | PPIVPMKKLAVKGGXXXXKQVLKFTLDCTHSVEDGIMDAANFEQFLQERIQVNGKAGNLAGRVVTTERNK |
Parental | SKITVTSEVP-FSKRYLKYLTKKYLKKNN-LRDWLRVVANSK-DSYELRYFQINQDEEEEE |
.K.TVTSE.P.FS......L..K...K.N.L.D.L......K..S..L.YFQINQDEEEE. | |
Retrocopy | TKTTVTSELP<FSSKRSLKLLTKKYLKKNNLCDQLHKLLTAK<ESEDLYYFQINQDEEEED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |