RetrogeneDB ID: | retro_mmul_1047 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 13:136398911..136399290(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2224 | ||
Ensembl ID: | ENSMMUG00000018347 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:RefSeq peptide;Acc:NP_001180493] |
Percent Identity: | 85.38 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAPVKKLVAKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKI |
MAPVKKLV.KGG.KKKQVLKFTLDCTHP.EDGIMDAANFEQFLQE.IKVN.KAG.LGGGVVTIE.SKSKI | |
Retrocopy | MAPVKKLVVKGGQKKKQVLKFTLDCTHPMEDGIMDAANFEQFLQESIKVN*KAGKLGGGVVTIESSKSKI |
Parental | TVTSEVPFSKRYLKYLTKKY-LKKNNLRDWLR-VVANSKESYELRYFQINQDEEEEEDED |
TVTSEVPFSK.YLKY.TKK..LK.NNLRDW.....ANSKESYELRYFQIN.DEEEEED.D | |
Retrocopy | TVTSEVPFSKSYLKYHTKKF<LK-NNLRDWFA<IAANSKESYELRYFQINEDEEEEEDKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 89 .53 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 69 .81 RPM |
SRP007412_cerebellum | 0 .00 RPM | 98 .61 RPM |
SRP007412_heart | 0 .00 RPM | 126 .25 RPM |
SRP007412_kidney | 0 .00 RPM | 112 .56 RPM |
SRP007412_liver | 0 .00 RPM | 60 .92 RPM |
SRP007412_testis | 0 .08 RPM | 65 .70 RPM |