RetrogeneDB ID: | retro_pabe_3782 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:80649692..80650075(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSPPYG00000001951 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:HGNC Symbol;Acc:10315] |
Percent Identity: | 87.6 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAPVKKLVAKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGG-GVVTIERSKSK |
MAPVKKLV.KG.K.KKQ.LKFTLDCTHP..DGIMDAANFEQFLQERIK..GKA..LG..GVVTIERSKSK | |
Retrocopy | MAPVKKLVMKGDKRKKQILKFTLDCTHPIKDGIMDAANFEQFLQERIKAIGKAEKLGK<GVVTIERSKSK |
Parental | ITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED |
ITVTSEVPFSKRYLKYLTKKYLKKNNL.DWL.VVANSKESYE..YFQINQDEEEEEDED | |
Retrocopy | ITVTSEVPFSKRYLKYLTKKYLKKNNLCDWLHVVANSKESYEFPYFQINQDEEEEEDED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .17 RPM | 181 .85 RPM |
SRP007412_cerebellum | 0 .00 RPM | 143 .98 RPM |
SRP007412_heart | 0 .15 RPM | 119 .00 RPM |
SRP007412_kidney | 0 .20 RPM | 274 .42 RPM |
SRP007412_liver | 0 .12 RPM | 148 .82 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4865 |
Pan troglodytes | retro_ptro_3240 |
Macaca mulatta | retro_mmul_2601 |