RetrogeneDB ID: | retro_pabe_166 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2a:18206897..18207281(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000012146 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSPPYG00000001951 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:HGNC Symbol;Acc:10315] |
Percent Identity: | 86.29 % |
Parental protein coverage: | 96.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KKLVAKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTS |
.K.....G.KKKQVLKFTL.CTHPVEDGI.DAANFEQFLQERIKVNGKAGNLGGGVVT..RSKSKITVTS | |
Retrocopy | EKACGEEGQKKKQVLKFTLGCTHPVEDGIVDAANFEQFLQERIKVNGKAGNLGGGVVTVKRSKSKITVTS |
Parental | EVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED |
.VPFSKRYLKYLTKKYLKKNNLRDWL..VANSKESY.L..FQINQDEEEEEDED | |
Retrocopy | KVPFSKRYLKYLTKKYLKKNNLRDWLCIVANSKESYKLHSFQINQDEEEEEDED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 181 .85 RPM |
SRP007412_cerebellum | 0 .00 RPM | 143 .98 RPM |
SRP007412_heart | 0 .00 RPM | 119 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 274 .42 RPM |
SRP007412_liver | 0 .00 RPM | 148 .82 RPM |