RetrogeneDB ID: | retro_ggor_1111 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 14:58174942..58175314(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSGGOG00000027739 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.32 % |
Parental protein coverage: | 96.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAPVKKLVVKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKI |
.APVKKLV.KG.KK.KQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVT.ERSKSKI | |
Retrocopy | IAPVKKLVAKGDKKMKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTNERSKSKI |
Parental | TVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEE |
TVTS.V.FSKRYLKYLTKKYLKKNNL.DWLR..ANSKESYELRYF.INQDEEE. | |
Retrocopy | TVTSKVTFSKRYLKYLTKKYLKKNNLCDWLRILANSKESYELRYF*INQDEEED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 164 .77 RPM |
SRP007412_cerebellum | 0 .04 RPM | 187 .18 RPM |
SRP007412_heart | 0 .09 RPM | 89 .68 RPM |
SRP007412_kidney | 0 .20 RPM | 348 .25 RPM |
SRP007412_liver | 0 .21 RPM | 216 .43 RPM |
SRP007412_testis | 0 .10 RPM | 211 .76 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1445 |
Pan troglodytes | retro_ptro_984 |
Pongo abelii | retro_pabe_1196 |