RetrogeneDB ID: | retro_ggor_37 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:16857264..16857645(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000024344 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSGGOG00000027739 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.25 % |
Parental protein coverage: | 99.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAPVKKLVVKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKI |
MA.VKK.VVKGGKKKKQVLKFTL.CTHPVEDGIMDAANFEQFLQERIKVNGKA.NLGGG..TIERSKSKI | |
Retrocopy | MASVKKPVVKGGKKKKQVLKFTLECTHPVEDGIMDAANFEQFLQERIKVNGKAENLGGGMATIERSKSKI |
Parental | TVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDE |
.VTSEVPFSKRY.KYLTK.Y..KNNLRDWL..V.NSK.SY.LRYFQINQD.EEE... | |
Retrocopy | NVTSEVPFSKRYFKYLTKTYM-KNNLRDWLLLVTNSKDSYKLRYFQINQDKEEEDED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .10 RPM | 164 .77 RPM |
SRP007412_cerebellum | 0 .00 RPM | 187 .18 RPM |
SRP007412_heart | 0 .03 RPM | 89 .68 RPM |
SRP007412_kidney | 0 .04 RPM | 348 .25 RPM |
SRP007412_liver | 0 .03 RPM | 216 .43 RPM |
SRP007412_testis | 0 .00 RPM | 211 .76 RPM |