RetrogeneDB ID: | retro_mmul_2467 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 9:102568444..102568814(-) | ||
Located in intron of: | ENSMMUG00000007662 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2224 | ||
Ensembl ID: | ENSMMUG00000018347 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:RefSeq peptide;Acc:NP_001180493] |
Percent Identity: | 82.17 % |
Parental protein coverage: | 96.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | VKKLVAKGGKK-KKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGG-GVVTIERSKSKIT |
VKKLVAK.GKK.KKQVL.FTLDCTH.VE.GI.DAANFEQFLQERI.VNGKAGNLGG....TIER.KSKIT | |
Retrocopy | VKKLVAKRGKK<KKQVLTFTLDCTHLVENGIIDAANFEQFLQERIEVNGKAGNLGG<SIITIERNKSKIT |
Parental | VTSEVP-FSKRYLKYLT-KKYLKKNNLRDWLRVVANSKES-YELRYFQINQDEEEEEDE |
VTSEVP.FSKRYLKYLT.KKYL.KNNL.DWL.VVANSK.S.YE..YFQIN.DEEEEE.E | |
Retrocopy | VTSEVP<FSKRYLKYLT>KKYL-KNNLCDWLWVVANSKKSYYE*SYFQINLDEEEEEGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 89 .53 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 69 .81 RPM |
SRP007412_cerebellum | 0 .52 RPM | 98 .61 RPM |
SRP007412_heart | 0 .06 RPM | 126 .25 RPM |
SRP007412_kidney | 0 .00 RPM | 112 .56 RPM |
SRP007412_liver | 0 .00 RPM | 60 .92 RPM |
SRP007412_testis | 0 .04 RPM | 65 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_726 |
Pan troglodytes | retro_ptro_517 |
Callithrix jacchus | retro_cjac_1055 |