RetrogeneDB ID: | retro_mmul_445 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:185520701..185521074(+) | ||
Located in intron of: | ENSMMUG00000013882 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2224 | ||
Ensembl ID: | ENSMMUG00000018347 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:RefSeq peptide;Acc:NP_001180493] |
Percent Identity: | 69.17 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MAPVKKLVA-KGGKKKK-QVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERS-K |
MAP.K.LV..KGG.....QVLKFTLDC.HP.EDGIMDAANF.QFLQERIKVN.KA.N..GG.V.I.R..K | |
Retrocopy | MAPMKNLVV<KGGXXXXXQVLKFTLDCIHPIEDGIMDAANFQQFLQERIKVNRKARNVSGG-VVIKRA<K |
Parental | SKITVTSEVPFSKRYLKYL-TKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEE-DED |
.KIT.TS..P..K....YL..KKYLKKNNLRD...V.ANSK..YELRYFQINQDE.EEE.DED | |
Retrocopy | GKITMTSKTPLPK---RYL>NKKYLKKNNLRD*MCVTANSKKGYELRYFQINQDEQEEE<DED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 89 .53 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 69 .81 RPM |
SRP007412_cerebellum | 0 .00 RPM | 98 .61 RPM |
SRP007412_heart | 0 .06 RPM | 126 .25 RPM |
SRP007412_kidney | 0 .00 RPM | 112 .56 RPM |
SRP007412_liver | 0 .00 RPM | 60 .92 RPM |
SRP007412_testis | 0 .04 RPM | 65 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_485 |
Pan troglodytes | retro_ptro_365 |
Pongo abelii | retro_pabe_248 |