Parental gene:

RPL22, ENSPPYG00000001951

Aliases:None
Description:ribosomal protein L22 [Source:HGNC Symbol;Acc:10315]
Organism:Orangutan (Pongo abelii)
Coordinates:1:224330364..224348707(+)


>ENSPPYG00000001951
ATGGCTCCTGTGAAAAAGCTTGTGGCAAAGGGGGGCAAAAAAAAGAAGCAAGTTCTGAAGTTCACTCTTGATTGCACCCA
CCCTGTAGAAGATGGAATCATGGATGCTGCCAATTTTGAGCAGTTTTTGCAAGAAAGGATCAAAGTGAACGGAAAAGCTG
GGAACCTTGGTGGAGGGGTGGTGACCATCGAAAGGAGCAAGAGCAAGATCACCGTGACATCCGAGGTGCCTTTCTCCAAA
AGGTATTTGAAATATCTCACCAAAAAATATTTGAAGAAGAATAATCTACGTGACTGGTTGCGCGTAGTTGCTAACAGCAA
AGAGAGTTACGAATTACGTTACTTCCAGATTAACCAGGACGAAGAAGAGGAGGAAGATGAGGATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 181 .85 RPM
SRP007412_cerebellum 143 .98 RPM
SRP007412_heart 119 .00 RPM
SRP007412_kidney 274 .42 RPM
SRP007412_liver 148 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009864 ortholog_one2one 7 retrogenes
Bos taurus ENSBTAG00000014423 ortholog_one2one 4 retrogenes
Choloepus hoffmanni ENSCHOG00000007477 ortholog_one2one 2 retrogenes
Callithrix jacchus ENSCJAG00000000132 ortholog_one2one 12 retrogenes
Cavia porcellus ENSCPOG00000020139 possible_ortholog 2 retrogenes
Dasypus novemcinctus ENSDNOG00000013166 ortholog_one2one 8 retrogenes
Felis catus ENSFCAG00000006320 ortholog_one2one 3 retrogenes
Homo sapiens ENSG00000116251 ortholog_one2one 16 retrogenes
Gorilla gorilla ENSGGOG00000027739 possible_ortholog 10 retrogenes
Loxodonta africana ENSLAFG00000006352 ortholog_one2one 5 retrogenes
Macropus eugenii ENSMEUG00000008801 possible_ortholog 1 retrogene
Macaca mulatta ENSMMUG00000018347 possible_ortholog 12 retrogenes
Monodelphis domestica ENSMODG00000006225 possible_ortholog 1 retrogene
Mustela putorius furo ENSMPUG00000007087 ortholog_one2many 6 retrogenes
Mus musculus ENSMUSG00000028936 ortholog_one2one 5 retrogenes
Nomascus leucogenys ENSNLEG00000010337 ortholog_one2one 10 retrogenes
Otolemur garnettii ENSOGAG00000014776 ortholog_one2one 7 retrogenes
Pongo abelii ENSPPYG00000025900 within_species_paralog 1 retrogene
Pan troglodytes ENSPTRG00000000076 ortholog_one2one 14 retrogenes
Rattus norvegicus ENSRNOG00000011104 ortholog_one2one 5 retrogenes
Sarcophilus harrisii ENSSHAG00000018731 possible_ortholog 1 retrogene
Sus scrofa ENSSSCG00000003367 ortholog_one2one 4 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000002832 possible_ortholog 4 retrogenes
Tupaia belangeri ENSTBEG00000009172 ortholog_one2one 33 retrogenes
Tarsius syrichta ENSTSYG00000003649 possible_ortholog 32 retrogenes
Tursiops truncatus ENSTTRG00000010488 ortholog_one2one 8 retrogenes
Vicugna pacos ENSVPAG00000009466 ortholog_one2one 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_166 86.29 96.88
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2. retro_pabe_248 70.99 100.00
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3. retro_pabe_349 81.75 98.44
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4. retro_pabe_590 79.53 99.22
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5. retro_pabe_966 86.05 100.00
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6. retro_pabe_1196 89.92 100.00
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7. retro_pabe_1213 82.11 92.97
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8. retro_pabe_1435 74.11 87.50
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9. retro_pabe_3114 88.04 71.88
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10. retro_pabe_3782 87.60 100.00
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11. retro_pabe_3817 75.00 74.22
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Download FASTA sequences of all ENSPPYG00000001951 retrocopies