RetrogeneDB ID: | retro_mmul_469 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:19161888..19162276(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000021129 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2224 | ||
Ensembl ID: | ENSMMUG00000018347 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:RefSeq peptide;Acc:NP_001180493] |
Percent Identity: | 76.92 % |
Parental protein coverage: | 99.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAPVKKLVAKGGKKKKQVL--KFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSK- |
M.PVKK...KGG....QVL..KFTLD.THPVEDGIMDA.NFEQFLQE.IKVN.KA.N.GGGVVTIERSK. | |
Retrocopy | MVPVKKPLVKGGXXXQQVLNLKFTLDRTHPVEDGIMDATNFEQFLQEKIKVNRKAENFGGGVVTIERSK> |
Parental | SKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDE |
SKI.VTSEVPFSKRY.KYLTKKYLKKNNLRDWL..VANS...Y.L.YFQINQD.EEE... | |
Retrocopy | SKINVTSEVPFSKRYFKYLTKKYLKKNNLRDWLLLVANSNDRYKLPYFQINQDKEEEDKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 89 .53 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 69 .81 RPM |
SRP007412_cerebellum | 0 .19 RPM | 98 .61 RPM |
SRP007412_heart | 0 .06 RPM | 126 .25 RPM |
SRP007412_kidney | 0 .12 RPM | 112 .56 RPM |
SRP007412_liver | 0 .04 RPM | 60 .92 RPM |
SRP007412_testis | 0 .15 RPM | 65 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_349 |
Pan troglodytes | retro_ptro_275 |
Pongo abelii | retro_pabe_349 |