RetrogeneDB ID: | retro_mmul_1512 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:66699864..66700247(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000018509 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2224 | ||
Ensembl ID: | ENSMMUG00000018347 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:RefSeq peptide;Acc:NP_001180493] |
Percent Identity: | 89.92 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAPVKKLVAKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKI |
MAPVKKLVAKGG...KQVLKF.LDCTHPVEDGI.DAANFEQFLQERIKVNGKAGNLGGGV.TIERSKSKI | |
Retrocopy | MAPVKKLVAKGGXXXKQVLKFPLDCTHPVEDGIIDAANFEQFLQERIKVNGKAGNLGGGVATIERSKSKI |
Parental | TVTSEV-PFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED |
T.TSEV..FSKRYLKYLTKKYLK.NNLRDWL.VVANSK.SYEL.YFQINQDEEEEEDED | |
Retrocopy | TMTSEV<AFSKRYLKYLTKKYLKNNNLRDWLCVVANSKDSYELHYFQINQDEEEEEDED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 89 .53 RPM |
SRP007412_brain_prefrontal_cortex | 0 .24 RPM | 69 .81 RPM |
SRP007412_cerebellum | 0 .00 RPM | 98 .61 RPM |
SRP007412_heart | 0 .00 RPM | 126 .25 RPM |
SRP007412_kidney | 0 .00 RPM | 112 .56 RPM |
SRP007412_liver | 0 .00 RPM | 60 .92 RPM |
SRP007412_testis | 0 .00 RPM | 65 .70 RPM |