RetrogeneDB ID: | retro_amel_870 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192699.1:1135467..1135828(+) | ||
Located in intron of: | ENSAMEG00000018390 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSAMEG00000009864 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:HGNC Symbol;Acc:10315] |
Percent Identity: | 60.16 % |
Parental protein coverage: | 91.6 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KKLVAK-GGKKKKQVLKFTLDCTHP-VEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITV |
KKLVAK.GG..........L..T.P.V.DGIMDAANFEQFLQE.IKVNGKAGNLGG.VVT.ER.KSKITV | |
Retrocopy | KKLVAK<GGXXXXXGKF*SLPLTAPTVKDGIMDAANFEQFLQEKIKVNGKAGNLGGVVVTTERCKSKITV |
Parental | TSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSK-DSYELRYFQINQDEEEE |
TS.................KKN.L.D....V.N.K.DS.EL.YFQINQDEEE. | |
Retrocopy | TSGXXXXXXXXXXXXXXXVKKNDLCD*SCIVTNCK<DSCELCYFQINQDEEED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |