Parental gene:

HMGB3, ENSCAFG00000028715

Aliases:None
Description:high mobility group box 3 [Source:HGNC Symbol;Acc:5004]
Organism:Dog (Canis familiaris)
Coordinates:X:119151721..119161866(+)


>ENSCAFG00000028715
ATGGAAACTCTTCCTTTGAAGAATCCGAGGAAGCCTTTTGTCATTCGAATCAGGATGGCTAAAGGTGATCCCAAGAAACC
AAAGGGCAAGATGTCTGCTTATGCCTTCTTTGTGCAGACGTGCAGAGAGGAACATAAGAAGAAAAACCCGGAGGTTCCTG
TCAATTTTGCTGAGTTTTCCAAGAAGTGCTCTGAGAGGTGGAAGACAATGTCTGGAAAAGAGAAGTCGAAATTTGATGAA
ATGGCCAAGGCAGATAAAGTGCGCTATGATCGGGAAATGAAGGATTATGGACCCGCTAAGGGAGGCAAGAAGAAGAAGGA
CCCTAATGCCCCCAAAAGACCACCGTCTGGATTTTTCCTGTTCTGCTCGGAATTCCGCCCCAAGATCAAATCGACAAACC
CTGGAATCTCCATTGGAGATGTGGCGAAGAAGCTCGGTGAGATGTGGAATAACTTAAGTGACAGCGAGAAGCAGCCTTAC
AACAACAAGGCAGCCAAGCTGAAGGAGAAGTATGAGAAGGATGTCGCTGACTATAAGTCTAAAGGGAAGTTTGATGGCGC
AAAGGGTCCCGCTAAAGTTGCCCGGAAAAAGGTGGAAGAAGAAGATGAAGAAGACGAAGAGGAAGAAGAGGAGGAGGAGG
AGGAGGAGGAGGATGAATAA

Library Parental gene expression (RPM)
SRP017611_brain 13 .18 RPM
SRP017611_kidney 26 .22 RPM
SRP017611_liver 70 .56 RPM
SRP012049_cerebellum 32 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005150 possible_ortholog 2 retrogenes
retro_btau_190, retro_btau_38,
Canis familiaris ENSCAFG00000006597 other_paralog 13 retrogenes
retro_cfam_1088, retro_cfam_1102, retro_cfam_1387, retro_cfam_1628, retro_cfam_1765, retro_cfam_1831, retro_cfam_1980, retro_cfam_242, retro_cfam_280, retro_cfam_467, retro_cfam_495, retro_cfam_521, retro_cfam_528,
Choloepus hoffmanni ENSCHOG00000005005 ortholog_one2one 2 retrogenes
retro_chof_1891, retro_chof_2010,
Callithrix jacchus ENSCJAG00000003936 possible_ortholog 9 retrogenes
retro_cjac_1596, retro_cjac_1950, retro_cjac_2343, retro_cjac_2469, retro_cjac_2470, retro_cjac_2738, retro_cjac_2900, retro_cjac_688, retro_cjac_965,
Equus caballus ENSECAG00000020596 ortholog_one2one 1 retrogene
retro_ecab_890,
Echinops telfairi ENSETEG00000015689 possible_ortholog 4 retrogenes
retro_etel_104, retro_etel_1272, retro_etel_385, retro_etel_465,
Felis catus ENSFCAG00000024624 ortholog_one2one 4 retrogenes
retro_fcat_1480, retro_fcat_1504, retro_fcat_265, retro_fcat_865,
Gorilla gorilla ENSGGOG00000027164 possible_ortholog 16 retrogenes
retro_ggor_1371, retro_ggor_1538, retro_ggor_1540, retro_ggor_1651, retro_ggor_1834, retro_ggor_2104, retro_ggor_2250, retro_ggor_2469, retro_ggor_2490, retro_ggor_2580, retro_ggor_272, retro_ggor_2944, retro_ggor_301, retro_ggor_414, retro_ggor_549, retro_ggor_618,
Loxodonta africana ENSLAFG00000025877 ortholog_one2one 1 retrogene
retro_lafr_893,
Microcebus murinus ENSMICG00000015668 possible_ortholog 4 retrogenes
retro_mmur_564, retro_mmur_60, retro_mmur_853, retro_mmur_994,
Myotis lucifugus ENSMLUG00000010926 ortholog_one2many 4 retrogenes
retro_mluc_1055, retro_mluc_1989, retro_mluc_215, retro_mluc_529,
Macaca mulatta ENSMMUG00000004633 possible_ortholog 20 retrogenes
retro_mmul_1003, retro_mmul_1115, retro_mmul_1143, retro_mmul_1303, retro_mmul_1341, retro_mmul_1482, retro_mmul_1568, retro_mmul_1624, retro_mmul_1799, retro_mmul_1957, retro_mmul_2106, retro_mmul_2425, retro_mmul_2451, retro_mmul_2469, retro_mmul_2484, retro_mmul_2526, retro_mmul_267, retro_mmul_399, retro_mmul_514, retro_mmul_597,
Monodelphis domestica ENSMODG00000005735 ortholog_one2one 7 retrogenes
retro_mdom_1257, retro_mdom_1508, retro_mdom_1883, retro_mdom_1952, retro_mdom_587, retro_mdom_698, retro_mdom_831,
Mustela putorius furo ENSMPUG00000011606 ortholog_one2many 2 retrogenes
retro_mputfur_138, retro_mputfur_26,
Mus musculus ENSMUSG00000015217 possible_ortholog 1 retrogene
retro_mmus_273,
Oryctolagus cuniculus ENSOCUG00000005986 possible_ortholog 7 retrogenes
retro_ocun_1033, retro_ocun_1913, retro_ocun_1914, retro_ocun_534, retro_ocun_568, retro_ocun_891, retro_ocun_931,
Otolemur garnettii ENSOGAG00000001773 possible_ortholog 19 retrogenes
retro_ogar_1318, retro_ogar_1647, retro_ogar_1728, retro_ogar_187, retro_ogar_1930, retro_ogar_204, retro_ogar_2076, retro_ogar_2530, retro_ogar_2591, retro_ogar_2678, retro_ogar_2743, retro_ogar_2983, retro_ogar_3127, retro_ogar_3371, retro_ogar_343, retro_ogar_3433, retro_ogar_3479, retro_ogar_3513, retro_ogar_65,
Procavia capensis ENSPCAG00000001945 ortholog_one2one 1 retrogene
retro_pcap_328,
Pteropus vampyrus ENSPVAG00000000219 ortholog_one2one 1 retrogene
retro_pvam_356,
Rattus norvegicus ENSRNOG00000011096 possible_ortholog 4 retrogenes
retro_rnor_1049, retro_rnor_2303, retro_rnor_2359, retro_rnor_2363,
Rattus norvegicus ENSRNOG00000050910 possible_ortholog 5 retrogenes
retro_rnor_1956, retro_rnor_2516, retro_rnor_2625, retro_rnor_720, retro_rnor_954,
Sarcophilus harrisii ENSSHAG00000002916 ortholog_one2one 2 retrogenes
retro_shar_139, retro_shar_316,
Sus scrofa ENSSSCG00000012745 possible_ortholog 3 retrogenes
retro_sscr_1094, retro_sscr_466, retro_sscr_467,
Ictidomys tridecemlineatus ENSSTOG00000023908 possible_ortholog 6 retrogenes
retro_itri_1366, retro_itri_1527, retro_itri_1655, retro_itri_1749, retro_itri_777, retro_itri_909,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1537 87.08 80.82
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Download FASTA sequences of all ENSCAFG00000028715 retrocopies