RetrogeneDB ID: | retro_ggor_2469 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 6:122205452..122206000(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSGGOG00000027164 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.18 % |
Parental protein coverage: | 92.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
M.K.DPKKPKGKMSAYAFFVQ..REEHKKKN.E.P.NF.EFSK.CSERWKTMSGKE.SKFDEMAKADKV. | |
Retrocopy | MDKVDPKKPKGKMSAYAFFVQMGREEHKKKNLEFPINFTEFSKNCSERWKTMSGKERSKFDEMAKADKVH |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVA-KKLGEMWNNLNDSEK |
YD.EMK...PAKGG.KKK.PNAPKRPPSGFFLF.SEF..KIKSTNP.ISIGDV..KKLGEMWNNLNDS.K | |
Retrocopy | YDWEMKN*EPAKGG-KKKNPNAPKRPPSGFFLFYSEFCHKIKSTNPDISIGDVS<KKLGEMWNNLNDSKK |
Parental | QPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDE |
QPYITK.A.LK.KYEKDVAD.KSKGKFDG.KG..KVA.KKVEE... | |
Retrocopy | QPYITKVAQLK-KYEKDVADCKSKGKFDGPKGSTKVAWKKVEEDNK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .26 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .07 RPM |
SRP007412_heart | 0 .00 RPM | 3 .53 RPM |
SRP007412_kidney | 0 .00 RPM | 12 .80 RPM |
SRP007412_liver | 0 .00 RPM | 21 .34 RPM |
SRP007412_testis | 0 .21 RPM | 21 .34 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3653 |
Pan troglodytes | retro_ptro_2477 |
Pongo abelii | retro_pabe_3000 |
Macaca mulatta | retro_mmul_1799 |