RetrogeneDB ID: | retro_chof_2010 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_453483:127..462(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSCHOG00000005005 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 70.18 % |
Parental protein coverage: | 64.94 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWN |
..K.DKVRY..EMKDY.P.K.G.....P..PK..P.GFFL..SEF.PK.KSTNPGISIGDVAKKLGEMWN | |
Retrocopy | LMKVDKVRYSWEMKDYEPVK-GQEEEGP*CPKWQPCGFFLSYSEFCPKVKSTNPGISIGDVAKKLGEMWN |
Parental | NLSDNEKQPYNNKAAKLKEKYEK-DVADYKSKGKFDGAKGPAKV |
N.S.NEK.PYNNKA.KLKEKY...DV.D.K.KGKFD..KGPAKV | |
Retrocopy | NRSNNEKKPYNNKASKLKEKYGR<DVPDCKFKGKFDSSKGPAKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |