RetrogeneDB ID: | retro_mmul_1303 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 17:82120718..82121226(+) | ||
Located in intron of: | ENSMMUG00000002875 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSMMUG00000004633 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 67.42 % |
Parental protein coverage: | 87.56 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFD-EMAKADKV |
MAKGDPKKPKGKMSAYAFFVQ.CREEHKKKNPEVPV..AEF.KKCSER.KT.SGK.K...D...AKA..V | |
Retrocopy | MAKGDPKKPKGKMSAYAFFVQMCREEHKKKNPEVPVDLAEFFKKCSER*KTVSGKDKYESD<QKAKAENV |
Parental | RYDREMKDYG-PAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSE |
..D.EM.D....A..GKK...PN.PKR.PS..F.F.SE...K.KS.NPGI......KKLGEMWNNL.D.. | |
Retrocopy | GSDGEMNDHD<LAQEGKKA--PNVPKRSPSELFPFRSEVHFKVKSANPGIH----GKKLGEMWNNLSDRK |
Parental | KQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVA |
KQP.ITK..KLKEK.EK.VAD.K.KG.FDG.K.PAKVA | |
Retrocopy | KQPDITKVEKLKEKDEKNVADSKCKGEFDGSKHPAKVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 8 .85 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 5 .47 RPM |
SRP007412_cerebellum | 0 .65 RPM | 3 .29 RPM |
SRP007412_heart | 0 .00 RPM | 10 .07 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .45 RPM |
SRP007412_liver | 0 .00 RPM | 3 .21 RPM |
SRP007412_testis | 0 .00 RPM | 33 .70 RPM |