RetrogeneDB ID: | retro_ocun_891 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 16:26380492..26380830(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000005986 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.31 % |
Parental protein coverage: | 57.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAK-KLGEMWNNLSDSEKQPYITKAAKLKE |
G.KK.KD...P.RPPS.FFL.C.EF..KIK.T..GIS.GD.AK.KLG.MW.NL.DSEKQP.IT...KLK. | |
Retrocopy | GDKKRKDLYDPQRPPSVFFLLC*EFYSKIKTTHSGISFGDMAK<KLGKMWDNLQDSEKQPHITGSMKLKR |
Parental | KYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEDEEEEEEEEEE |
...K.V.D..S.GKFDG.KGPAK....KV..ED............. | |
Retrocopy | --YKGVGDPHSEGKFDGIKGPAKGSLRKVGNEDKDRRSNKKQTSKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .32 RPM |
SRP017611_liver | 0 .00 RPM | 3 .24 RPM |