RetrogeneDB ID: | retro_ocun_568 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:73966067..73966620(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000005986 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.79 % |
Parental protein coverage: | 93.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
MAKGDPKKPKGKMSAYAF.VQTCR.EHKK.NP.....FAEF.K.CS.RWKT.SGK..SK.D.M.K.D.V. | |
Retrocopy | MAKGDPKKPKGKMSAYAF-VQTCRKEHKK-NPNL--SFAEFFKPCSGRWKTISGKQNSKCDGMMKVDTVC |
Parental | YDREMKDYGPAK--GGKKKK-DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDS |
YD.EMKDYGPAK...GKKKK..PNAPKRPPSGFFLF.SEF.P.IKSTNPGISIGDVAKKL..MWNNLS.S | |
Retrocopy | YDWEMKDYGPAKESKGKKKK>HPNAPKRPPSGFFLFYSEFCPNIKSTNPGISIGDVAKKLLVMWNNLSGS |
Parental | EKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEED |
EKQP.IT.AA.L.EKY.KDVADYKSKGKFDG.K.PAKV..K.VE.E...D | |
Retrocopy | EKQPCITRAAEL-EKYQKDVADYKSKGKFDGTKRPAKVVWKIVEKEGQGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .32 RPM |
SRP017611_liver | 0 .00 RPM | 3 .24 RPM |