RetrogeneDB ID: | retro_mmul_1957 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:87177066..87177465(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSMMUG00000004633 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 84.44 % |
Parental protein coverage: | 66.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDRE |
DPKKPKGK.SA.AFF.QTCREEHKKKNPEVPVNFAEF.KKCSERWK.MS.K.KSKFDEMAK.DK..YD.. | |
Retrocopy | DPKKPKGKISAFAFFGQTCREEHKKKNPEVPVNFAEFFKKCSERWKMMSEKKKSKFDEMAKVDKECYDWK |
Parental | MKDYGPAKGGKKKKDPNAPK-RPPSGFFLFCSEFRPKIKSTNPGISIGDVAK-KLGEMWNNLNDS |
MKDYGPAK.GKK.K.PNAPK.RPPSGFFLFCSEF.PKIKSTN.GISIGDV...KLGEMWNNLNDS | |
Retrocopy | MKDYGPAKRGKKEKEPNAPK<RPPSGFFLFCSEFLPKIKSTNLGISIGDVTR>KLGEMWNNLNDS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 8 .85 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .47 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .29 RPM |
SRP007412_heart | 0 .00 RPM | 10 .07 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .45 RPM |
SRP007412_liver | 0 .00 RPM | 3 .21 RPM |
SRP007412_testis | 0 .00 RPM | 33 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3064 |
Pan troglodytes | retro_ptro_2066 |
Gorilla gorilla | retro_ggor_2104 |
Pongo abelii | retro_pabe_2538 |