RetrogeneDB ID: | retro_ggor_1834 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:27023601..27024194(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSGGOG00000027164 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.08 % |
Parental protein coverage: | 99.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
MAKGD.K.PKGKMSA..FFV.T.REEHKK..P..PV.F....K....R.....GKEK..........K.. | |
Retrocopy | MAKGDLKNPKGKMSANVFFVKTRREEHKKLKPDGPVSFLRIFKSYL-RGERQFGKEKINLIKSQRWVKYA |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAK-KL-GEMWN-NLNDS |
.D.EMKDY.PAKG.KKKK.P.A...PPS.FFLFCSEF.PKIKS..PG.S..DV.K.KL.GEMW...L.DS | |
Retrocopy | -DWEMKDYDPAKGHKKKKFPKAC*SPPSEFFLFCSEFYPKIKSPKPGVSVEDVTK<KLLGEMWD<CLSDS |
Parental | EKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAK-VARKKVEEEDEEEEEEEEEEEEEED |
EKQ..ITKA.KLKEKYEK.VAD.KSKGKFDG.KGP...V..KKVEE..E..EEEEE...EE.. | |
Retrocopy | EKQSCITKAVKLKEKYEKGVADFKSKGKFDGSKGPTN>VTWKKVEEDKEDKEEEEEMLAEEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 16 .26 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .07 RPM |
SRP007412_heart | 0 .00 RPM | 3 .53 RPM |
SRP007412_kidney | 0 .00 RPM | 12 .80 RPM |
SRP007412_liver | 0 .00 RPM | 21 .34 RPM |
SRP007412_testis | 0 .00 RPM | 21 .34 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2621 |
Pan troglodytes | retro_ptro_1766 |
Pongo abelii | retro_pabe_2339 |
Macaca mulatta | retro_mmul_1482 |