RetrogeneDB ID: | retro_ocun_931 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 17:12064291..12064874(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000027019 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000005986 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.04 % |
Parental protein coverage: | 95.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAKGDPKKPKGKMSAYAFF---VQTCREEHKKK-NPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKA |
.A.....KPKGKMSAYA.....VQTC.EEHKKK.NPEVPV..AEF.KKCS...KTMSGKEKSK...MAKA | |
Retrocopy | LANNTVRKPKGKMSAYAVLVHLVQTCKEEHKKK<NPEVPVSSAEFPKKCSKGRKTMSGKEKSKCHAMAKA |
Parental | DKVRYDREMKDYGPAKGGK-KKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLS |
.KV.YD.EM.D.GPAKGGK.KKK.P..P..P..GFFLFCSEF.P.IKSTNPGIS.GDVAK.LGE.W.NL. | |
Retrocopy | HKVHYDWEMRDCGPAKGGKEKKKGPECPYMPLLGFFLFCSEFHPRIKSTNPGISTGDVAKNLGETWSNLH |
Parental | DSEKQPYITKAAKLK-EKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEDEEEE |
.S..Q..ITKAAKL..EKY.KDVAD.KSK..F.GAK.PAKVARK.V..ED.ED.E.E | |
Retrocopy | NSKRQSCITKAAKLR<EKYDKDVADCKSKTEFNGAKAPAKVARKEVGQEDAEDKEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .32 RPM |
SRP017611_liver | 0 .00 RPM | 3 .24 RPM |