RetrogeneDB ID: | retro_cjac_1596 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 17:42293994..42294565(-) | ||
Located in intron of: | ENSCJAG00000002792 | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000032684 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000003936 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.23 % |
Parental protein coverage: | 94.58 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KKPKGKMSAYAFF-VQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREM |
.KPKGKM.AYAFF..Q.CRE..KKKN.E.PVNFA.FSKK..E.WKTMSGKEKS..DEMAKADK..YD.EM | |
Retrocopy | RKPKGKMFAYAFF<LQACREP-KKKNAEIPVNFAKFSKKYTEKWKTMSGKEKSTSDEMAKADKICYDSEM |
Parental | KDYGPAKGGK-KKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYIT |
KDYGP.KGGK..KKD.NA.KRP.S.FFLFCSEF..KI.S..PGISIGDVAKKL...WNNL.D..KQ..IT | |
Retrocopy | KDYGPSKGGK<NKKDLNALKRPLSRFFLFCSEFCLKINSADPGISIGDVAKKLHKRWNNLSDTGKQLCIT |
Parental | KAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEDDEEEEEEEEEEE |
KAAKLKEKYEKDVA..KSKGK.DG.KGPAKVA..KVEE..ED.EEEE..EEE.E | |
Retrocopy | KAAKLKEKYEKDVANCKSKGKSDGTKGPAKVAWTKVEEKGEDNEEEEAVEEENE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .49 RPM | 8 .59 RPM |
SRP051959_heart | 0 .51 RPM | 3 .93 RPM |
SRP051959_kidney | 0 .75 RPM | 3 .28 RPM |
SRP051959_liver | 0 .37 RPM | 14 .25 RPM |
SRP051959_lung | 0 .81 RPM | 3 .42 RPM |
SRP051959_lymph_node | 0 .68 RPM | 5 .52 RPM |
SRP051959_skeletal_muscle | 0 .35 RPM | 1 .73 RPM |
SRP051959_spleen | 0 .92 RPM | 6 .49 RPM |