RetrogeneDB ID: | retro_mdom_1508 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 5:55070200..55070639(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000020772 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSMODG00000005735 | ||
Aliases: | HMGB3, HmgB3x | ||
Description: | high mobility group protein B3 [Source:RefSeq peptide;Acc:NP_001157151] |
Percent Identity: | 91.95 % |
Parental protein coverage: | 78.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | EEHKKKNPEVPVNFAEFSKKCSERWKTM-SGK-EKSKFDEMAKADKVRYDREMKDYGPAKGGKKKKDPNA |
EEHKKKNPEVPVNFAEFSKKCSERWKT...GK..KSKFDEMAK.DKVRYDREMKDY.PAKGGKKKKDPNA | |
Retrocopy | EEHKKKNPEVPVNFAEFSKKCSERWKTV<PGK<DKSKFDEMAKTDKVRYDREMKDYRPAKGGKKKKDPNA |
Parental | PKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEKQPYNNKAAKLKEKYEKDVADYKS |
PKRPPSGF.LFCSEFRPKIKSTNPGIS.GDVAKKLGEMWNNLSDNEKQP.NNKAAK.KEKYEKDVADYK. | |
Retrocopy | PKRPPSGFCLFCSEFRPKIKSTNPGISTGDVAKKLGEMWNNLSDNEKQPHNNKAAKQKEKYEKDVADYKL |
Parental | KGKFDGAKG |
KGKFDGAKG | |
Retrocopy | KGKFDGAKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |