Parental gene: | ENSECAG00000010030 |
| Aliases: | None |
| Description: | None |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 5:12970419..12971542(+) |
>ENSECAG00000010030
ATAGGGAGGCAAAGGAGTACATTCCAAGTAAAGGAACAGGACAAAACTCCAGAAAAAGAACTAAATGAAACAGAAATAAG
CAATCTACCTGACAAAGTGTTCAAACAAAAAGTCAAGCTGCTCACTGATCTTGGGAGAAGGATGGATGAACACAGTGAGA
ACTTCAACAAAGAATTAGAAAATATAAAAAAACAATCAGAAATGAAGAATACAATAATGGAAATGAAAAATTCACTAGAG
GGACTCAATAGCAGAGTAGATGATACAGAAGAACGGATCAGCAAGCTGGATGAAAGACTAGAGGAAGTCACCCAAGCTGA
ACAGATAAAAGAAAAAATGAAAAAGACAGACAGTCTAAGGGATCTCTGGGACAACATCAAGTGCACTAAAATTCGTATTA
CAGGTGTCCCAGAAGAAGAGGGAGACAAAGGGGCAGAAATCTATTTAATAAAAATAGCTGAAAACTTTCCTAAGCTACAG
AAGGAAGCAGACTTCCAGGTACAGGAAGCACAGAACGCACCAAACAGGATAAACCCAAAGAGGCACACACCAAGACACAT
TATAAATAAAATTTCAAATCCTGGGCGCAATAAAGAGAGAATCCTAAAAGCTGCAAGAGAAAGGCAACAAGTTACATACA
AAGGAAATTCCATAAGGCTATCAGCTGACTTATCAGCAGAAACCTTACAAGCTAGAAGGAAGTGGCACAGTATATTTAAA
GTATTGAACAGAAAAAAACCTCCAAGAATACTTTACCTGGCAAGGTCATCATTCATAATGGAAGGAGAAATAAAGTGTTT
CCCAGATAAGCAAAAACTGAAGGAGTTTATCACCAAGAAACCAGCCTTACAAGAAATGCTGAAGGGACTTATTTAA
ATAGGGAGGCAAAGGAGTACATTCCAAGTAAAGGAACAGGACAAAACTCCAGAAAAAGAACTAAATGAAACAGAAATAAG
CAATCTACCTGACAAAGTGTTCAAACAAAAAGTCAAGCTGCTCACTGATCTTGGGAGAAGGATGGATGAACACAGTGAGA
ACTTCAACAAAGAATTAGAAAATATAAAAAAACAATCAGAAATGAAGAATACAATAATGGAAATGAAAAATTCACTAGAG
GGACTCAATAGCAGAGTAGATGATACAGAAGAACGGATCAGCAAGCTGGATGAAAGACTAGAGGAAGTCACCCAAGCTGA
ACAGATAAAAGAAAAAATGAAAAAGACAGACAGTCTAAGGGATCTCTGGGACAACATCAAGTGCACTAAAATTCGTATTA
CAGGTGTCCCAGAAGAAGAGGGAGACAAAGGGGCAGAAATCTATTTAATAAAAATAGCTGAAAACTTTCCTAAGCTACAG
AAGGAAGCAGACTTCCAGGTACAGGAAGCACAGAACGCACCAAACAGGATAAACCCAAAGAGGCACACACCAAGACACAT
TATAAATAAAATTTCAAATCCTGGGCGCAATAAAGAGAGAATCCTAAAAGCTGCAAGAGAAAGGCAACAAGTTACATACA
AAGGAAATTCCATAAGGCTATCAGCTGACTTATCAGCAGAAACCTTACAAGCTAGAAGGAAGTGGCACAGTATATTTAAA
GTATTGAACAGAAAAAAACCTCCAAGAATACTTTACCTGGCAAGGTCATCATTCATAATGGAAGGAGAAATAAAGTGTTT
CCCAGATAAGCAAAAACTGAAGGAGTTTATCACCAAGAAACCAGCCTTACAAGAAATGCTGAAGGGACTTATTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 0 .00 RPM |
| SRP021940_embryo | 0 .03 RPM |
| SRP021940_cerebellum | 0 .00 RPM |
| SRP021940_testis | 0 .00 RPM |
| SRP021940_placental_villous | 0 .00 RPM |
| SRP021940_articular_cartilage | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Equus caballus | ENSECAG00000016527 | within_species_paralog | 5 retrogenes | |
| Equus caballus | ENSECAG00000020332 | within_species_paralog | 9 retrogenes | |
| Equus caballus | ENSECAG00000022034 | within_species_paralog | 4 retrogenes | |
| Equus caballus | ENSECAG00000023806 | within_species_paralog | 15 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_136 | 63.06 | 89.69 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ecab_182 | 65.76 | 99.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ecab_201 | 68.08 | 87.29 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ecab_281 | 65.82 | 79.73 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ecab_306 | 66.30 | 91.75 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ecab_486 | 54.85 | 99.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ecab_521 | 64.29 | 84.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ecab_537 | 71.14 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ecab_582 | 66.55 | 99.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_ecab_590 | 68.12 | 99.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_ecab_658 | 59.60 | 99.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_ecab_670 | 63.85 | 99.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_ecab_722 | 66.67 | 59.79 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_ecab_786 | 63.33 | 90.72 | Please wait, loading | Please wait, loading | Please wait, loading |
| 15. | retro_ecab_974 | 61.42 | 84.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 16. | retro_ecab_996 | 66.10 | 99.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 17. | retro_ecab_1021 | 59.86 | 99.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 18. | retro_ecab_1023 | 65.76 | 98.97 | Please wait, loading | Please wait, loading | Please wait, loading |
| 19. | retro_ecab_1035 | 63.82 | 98.63 | Please wait, loading | Please wait, loading | Please wait, loading |
| 20. | retro_ecab_1071 | 65.54 | 99.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 21. | retro_ecab_1089 | 59.71 | 93.47 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000010030 retrocopies