RetrogeneDB ID: | retro_ecab_878 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 6:35164767..35165263(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000020332 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.97 % |
Parental protein coverage: | 82.93 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SKTLEMKNTMDEVKKNLGSVNNRADIIEETISSLEDRNIEILQIEEE-RELRLKRNEEILQEVSKSIRKG |
...L.MKN...E.K.N.....NRA...EE.IS..ED...E.....EE.RE.....NEEI..E.S..IRK. | |
Retrocopy | TEILNMKNIINEIKNNVEGIKNRAELVEERISDQEDKHLEMF-LMEE>RENXXXXNEEII*EISDLIRKS |
Parental | NIRLIGIPEGEEKDKGAESLFKEIIAGNFPNLGKELEIQVKEAKRIPNYITVKRHSPRHIVEKLAKVNDK |
NI....IPEG.E..KG.ESLFKEI..GNFPNLGK.L.IQV.EA.R.PNYI..K..SP.HI..KL.K..DK | |
Retrocopy | NIKIMDIPEG*EREKGSESLFKEIMTGNFPNLGKKLNIQVHEANRTPNYINAKKPSPKHIL-KLSKASDK |
Parental | EKVLRAANKKQQIITYKGAPIRLSADFSTET |
.K.LR....K...IT.KG.PIRLSADFS.ET | |
Retrocopy | -KILRETRQKN--ITFKGTPIRLSADFSAET |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .00 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .00 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .00 RPM |
SRP021940_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000010030 | 21 retrocopies |
retro_ecab_1021, retro_ecab_1023, retro_ecab_1035, retro_ecab_1071, retro_ecab_1089, retro_ecab_136, retro_ecab_182, retro_ecab_201, retro_ecab_281, retro_ecab_306, retro_ecab_486, retro_ecab_521, retro_ecab_537, retro_ecab_582, retro_ecab_590, retro_ecab_658, retro_ecab_670, retro_ecab_722, retro_ecab_786, retro_ecab_974, retro_ecab_996,
|
Equus caballus | ENSECAG00000016527 | 5 retrocopies | |
Equus caballus | ENSECAG00000020332 | 9 retrocopies |
retro_ecab_1018, retro_ecab_117, retro_ecab_125, retro_ecab_346, retro_ecab_54, retro_ecab_604, retro_ecab_774, retro_ecab_775, retro_ecab_878 ,
|
Equus caballus | ENSECAG00000022034 | 4 retrocopies | |
Equus caballus | ENSECAG00000023806 | 15 retrocopies |